- Create layered container architecture: Base, Light, Full, Computational - Implement non-root user management with UID/GID mapping - Add Markwhen timeline tool to documentation stack - Create wrapper scripts for environment variable handling - Update documentation across all containers - Establish naming convention using RCEO-AIOS-Public-Tools- prefix - Add organizational rule to keep repository root clean - Remove old unorganized container files
3.2 KiB
RCEO-AIOS-Public-Tools-DocMaker-Computational Container
This container is part of the AIOS-Public project and provides a comprehensive documentation and computational environment.
Overview
The RCEO-AIOS-Public-Tools-DocMaker-Computational container extends the full documentation environment with computational tools for data analysis, scientific computing, and interactive notebooks. It's designed for CTO mode operations involving R&D and computational work.
Tools Included
Inherits all tools from:
- RCEO-AIOS-Public-Tools-DocMaker-Full: All documentation and LaTeX tools
Computational Tools
- R Programming Language: Statistical computing and data analysis
- Python Scientific Stack:
- pandas - Data manipulation
- numpy - Numerical computing
- matplotlib - Visualization
- scipy - Scientific computing
- Jupyter Notebooks: Interactive computational environments
- GNU Octave: Numerical computations (MATLAB alternative)
- bc: Command-line calculator
Usage
Building the Computational Container
# From this directory
cd /home/localuser/AIWorkspace/AIOS-Public/Docker/RCEO-AIOS-Public-Tools-DocMaker-Computational
# Use the wrapper script to automatically detect and set user IDs
./docker-compose-wrapper.sh build
# Or run commands in the computational container with automatic user mapping
./docker-compose-wrapper.sh run docmaker-computational [command]
# Example: Run R analysis
./docker-compose-wrapper.sh run docmaker-computational Rscript analysis.R
# Example: Run Python analysis
./docker-compose-wrapper.sh run docmaker-computational python analysis.py
# Example: Start Jupyter notebook server
./docker-compose-wrapper.sh up
# Then access at http://localhost:8888
Using with docker-compose directly
# Set environment variables and run docker-compose directly
LOCAL_USER_ID=$(id -u) LOCAL_GROUP_ID=$(id -g) docker-compose up --build
# Or export variables first
export LOCAL_USER_ID=$(id -u)
export LOCAL_GROUP_ID=$(id -g)
docker-compose up
Using the wrapper script
# Build and start the computational container with Jupyter access and automatic user mapping
./docker-compose-wrapper.sh up --build
# Start without rebuilding
./docker-compose-wrapper.sh up
# View container status
./docker-compose-wrapper.sh ps
# Stop containers
./docker-compose-wrapper.sh down
User ID Mapping (For File Permissions)
The container automatically detects and uses the host user's UID and GID to ensure proper file permissions. This means:
- Files created inside the container will have the correct ownership on the host
- No more root-owned files after container operations
- Works across different environments (development, CI/CD, cloud)
The container detects the user ID from the mounted workspace volume. If needed, you can override the default values by setting environment variables:
# Set specific user ID and group ID before running docker-compose
export LOCAL_USER_ID=1000
export LOCAL_GROUP_ID=1000
docker-compose up
Or run with inline environment variables:
LOCAL_USER_ID=1000 LOCAL_GROUP_ID=1000 docker-compose up
The container runs as a non-root user named ReachableCEO-Tools with the detected host user's UID/GID.