Reorganize documentation to clean structure

- Move all docs to docs/ directory for clean repo structure
- Create LLM-optimized versions (*-LLM.MD) for AI tool consumption
- Update cross-references and links for new paths
- Maintain both human-readable and machine-optimized versions
- Complete documentation system with worklog tracking

docs/WORKLOG.md

@@ -0,0 +1,61 @@
+# Work Log
+
+**Project:** CTO Repository Setup  
+**Started:** 2025-09-05  
+**Current Branch:** LLMBOOTSTRAP  
+
+## Current Status
+
+| Field | Value |
+|-------|-------|
+| **Current Time** | 2025-09-05 (Session Active) |
+| **Status** | ✅ Bootstrap+Docs Complete - Ready to commit/push/tag |
+| **Last Completed** | Reorganized docs to clean structure with LLM versions |
+| **Currently Working On** | Final commit and milestone tagging |
+| **Next Up** | Commit LLMBOOTSTRAP branch, push all branches, tag milestone |
+
+## Session Log
+
+### 2025-09-05 - Initial Bootstrap Session
+
+**Time Range:** Session start → Current  
+**Branch:** LLMBOOTSTRAP  
+**Agent:** Claude Code  
+
+#### Completed Tasks ✅
+- [x] Created branch structure (LLMBOOTSTRAP, INTEGRATION-WIP, RELEASE)
+- [x] Established git workflow documentation (GIT_WORKFLOW.MD)
+- [x] Created comprehensive DO/DON'T examples
+- [x] Added tagging guidelines for milestones
+- [x] Built LLM-optimized AGENT.MD reference
+- [x] Tagged first milestone: `bootstrap-complete`
+- [x] Created worklog tracking system (WORKLOG.md, CURRENTWORK.md)
+- [x] Reorganized all docs to clean docs/ directory structure
+- [x] Created LLM-optimized versions of all documentation
+
+#### Currently Working On 🔄
+- [ ] Final commit of LLMBOOTSTRAP branch
+- [ ] Pushing all branches to remote
+- [ ] Tagging docs reorganization milestone
+
+#### Next Actions 📋
+- [ ] Commit current work to LLMBOOTSTRAP
+- [ ] Push LLMBOOTSTRAP branch
+- [ ] Ensure all branches are pushed
+- [ ] Tag `docs-reorganized` milestone
+
+## Milestones Completed
+
+| Date | Tag | Description |
+|------|-----|-------------|
+| 2025-09-05 | `bootstrap-complete` | Initial project structure and git workflow setup completed |
+
+## Links
+
+- **Detailed Current Work Notes:** [CURRENTWORK.md](./CURRENTWORK.md)
+- **Git Workflow:** [GIT_WORKFLOW.MD](./GIT_WORKFLOW.MD)  
+- **Agent Reference:** [AGENT.MD](./AGENT.MD)
+- **LLM Optimized Versions:** [WORKLOG-LLM.md](./WORKLOG-LLM.md), [CURRENTWORK-LLM.md](./CURRENTWORK-LLM.md), [AGENT-LLM.MD](./AGENT-LLM.MD)
+
+---
+*Last Updated: 2025-09-05 (Auto-updated by AI agents)*