feat(cloudron): update master control script with additional improvements

- Update CloudronStack/output/master-control-script.sh with latest automation logic
- Refine functionality and ensure proper operation
- Align with project standards and conventions

This continues to enhance the CloudronStack automation capabilities.

.gitignore

@@ -90,4 +90,4 @@ temp/
 .SynologyWorkingDirectory
 CloudronStack/collab/*.lock
 CloudronStack/collab/*test-*
-CloudronStack/output/CloudronPackages-*
+CloudronStack/output/CloudronPackages-Workspaces/

CloudronStack/output/master-control-script.sh

@@ -550,11 +550,15 @@ load_git_urls() {
 
 # Main function to process all applications
 main() {
-    log_message "INFO" "Starting Cloudron packaging process"
+    # Create main log file for the overall process
+    local main_log_file="$WORKSPACES_DIR/main-process.log"
+    touch "$main_log_file"
+    
+    log_message "INFO" "Starting Cloudron packaging process" | tee -a "$main_log_file"
     
     # Validate that required files exist
     if [[ ! -f "$SCRIPT_DIR/package-functions.sh" ]]; then
-        log_message "ERROR" "Package functions file does not exist: $SCRIPT_DIR/package-functions.sh"
+        log_message "ERROR" "Package functions file does not exist: $SCRIPT_DIR/package-functions.sh" | tee -a "$main_log_file"
         exit 1
     fi
     
@@ -562,7 +566,7 @@ main() {
     local url_list
     mapfile -t url_list < <(load_git_urls)
     local total=${#url_list[@]}
-    log_message "INFO" "Found $total URLs to process"
+    log_message "INFO" "Found $total URLs to process" | tee -a "$main_log_file"
     
     # Process applications in batches of 3 for parallel execution
     local i=0