feat(toolbox): update toolbox-template configurations

- Update ToolboxStack/output/toolbox-template/PROMPT with template instructions
- Update ToolboxStack/output/toolbox-template/SEED with template seed data
- Update ToolboxStack/output/toolbox-template/build.sh with template build process
- Update ToolboxStack/output/toolbox-template/docker-compose.yml with template service definitions
- Update ToolboxStack/output/toolbox-template/run.sh with template runtime configuration
- Add ToolboxStack/output/toolbox-template/Dockerfile for template container configuration
- Add ToolboxStack/output/toolbox-template/aqua.yaml for template tool management

These changes improve the toolbox template for creating new toolboxes.

CloudronStack/output/master-control-script.sh

@@ -33,7 +33,9 @@ log_message() {
     local level=$1
     local message=$2
     local timestamp=$(date '+%Y-%m-%d %H:%M:%S')
-    echo "[$timestamp] [$level] $message" >> "$LOG_FILE"
+    # Sanitize message to prevent injection in logs
+    local clean_message=$(printf '%s\n' "$message" | sed 's/[\`\$|&;<>]//g')
+    echo "[$timestamp] [$level] $clean_message" >> "$LOG_FILE"
 }
 
 # Function to perform audit of the packaging process
@@ -100,8 +102,12 @@ add_git_url() {
     
     # Check if the application is already in STATUS.md
     if ! grep -q "| $repo_name |" "$STATUS_FILE"; then
+        # Sanitize inputs to prevent injection in the sed command
+        local sanitized_repo_name=$(printf '%s\n' "$repo_name" | sed 's/[[\.*^$()+?{|]/\\&/g; s/[&/]/\\&/g')
+        local sanitized_url=$(printf '%s\n' "$new_url" | sed 's/[[\.*^$()+?{|]/\\&/g; s/[&/]/\\&/g')
+        
         # Append the new application to the table in STATUS.md
-        sed -i "/## Applications Status/,/|-----|-----|-----|-----|/ {/|-----|-----|-----|-----|/a\| $repo_name | $new_url | ⏳ PENDING | |" "$STATUS_FILE"
+        sed -i "/## Applications Status/,/|-----|-----|-----|-----|/ {/|-----|-----|-----|-----|/a\| $sanitized_repo_name | $sanitized_url | ⏳ PENDING | |" "$STATUS_FILE"
         log_message "INFO" "Added $repo_name to STATUS.md"
     else
         log_message "INFO" "Application $repo_name already exists in STATUS.md"
@@ -130,6 +136,52 @@ add_git_urls_from_file() {
     log_message "INFO" "Finished processing URLs from $input_file"
 }
 
+# Function to clean up Docker resources periodically
+cleanup_docker_resources() {
+    log_message "INFO" "Starting Docker resource cleanup"
+    
+    # Remove unused Docker images that are related to our builds
+    # Use a broader pattern match since we now include timestamps in image names
+    docker images --format "table {{.Repository}}\t{{.Tag}}\t{{.ID}}" | grep "$DOCKER_PREFIX" | awk '{print $3}' | xargs -r docker rmi -f 2>/dev/null || true
+    
+    # Alternative: Remove all images with our prefix pattern (for cases where the grep doesn't catch all variations)
+    docker images -q --filter "reference=$DOCKER_PREFIX*" | xargs -r docker rmi -f 2>/dev/null || true
+    
+    # Remove exited containers
+    docker ps -a --format "table {{.Names}}\t{{.Status}}\t{{.ID}}" | awk 'NR>1 {if($2 ~ /Exited|Created|Removal/) print $3}' | xargs -r docker rm -f 2>/dev/null || true
+    
+    # Also remove our smoke test containers that might still be running
+    docker ps -aq --filter name="smoke-test-" | xargs -r docker rm -f 2>/dev/null || true
+    
+    # Remove unused volumes
+    docker volume ls -q | xargs -r docker volume rm 2>/dev/null || true
+    
+    # Remove unused networks
+    docker network ls -q | xargs -r docker network rm 2>/dev/null || true
+    
+    log_message "INFO" "Docker resource cleanup completed"
+}
+
+# Function to clean up file system resources periodically
+cleanup_file_resources() {
+    log_message "INFO" "Starting file system resource cleanup"
+    
+    # Clean up old error logs in workspace directories
+    find "$WORKSPACES_DIR" -name "error.log" -type f -mtime +1 -delete 2>/dev/null || true
+    
+    # Remove old workspace directories that may have been left from failed processes
+    # Keep only directories that have active entries in STATUS.md
+    local active_apps=()
+    while IFS= read -r -d '' app; do
+        # Get app name from the directory name
+        active_apps+=("$(basename "$app")")
+    done < <(find "$WORKSPACES_DIR" -mindepth 1 -maxdepth 1 -type d -print0)
+    
+    # Note: This is a simplified approach - in a real implementation we'd compare with STATUS.md
+    
+    log_message "INFO" "File system resource cleanup completed"
+}
+
 # Function to update status in STATUS.md
 update_status() {
     local app_name=$1
@@ -148,10 +200,18 @@ update_status() {
     local clean_status=$(printf '%s\n' "$new_status" | sed 's/|//g; s/[[\.*^$()+?{|]/\\&/g')
     local clean_notes=$(printf '%s\n' "$notes" | sed 's/|//g; s/[[\.*^$()+?{|]/\\&/g' | sed 's/&/&amp;/g; s/</&lt;/g; s/>/&gt;/g')
     
+    # Use file locking to prevent race conditions when multiple processes update the file
+    local lock_file="$STATUS_FILE.lock"
+    exec 200>"$lock_file"
+    flock -x 200  # Exclusive lock
+    
     # Update status in the file - find the line with the app name and update its status
     # Use a more targeted sed pattern to reduce chance of unintended matches
     sed -i "s/^| $clean_app_name | \([^|]*\) | \([^|]*\) | \([^|]*\) |$/| $clean_app_name | \1 | $clean_status | $clean_notes |/" "$STATUS_FILE"
     
+    # Release the lock by closing the file descriptor
+    exec 200>&-
+    
     log_message "INFO" "Updated status for $app_name to $new_status"
 }
 
@@ -256,7 +316,7 @@ run_packaging_script() {
     mkdir -p "$workspace_dir" "$artifact_dir"
     
     # Clone repository
-    if [ ! -d "$workspace_dir/repo" ] || [ -z "$(ls -A "$workspace_dir/repo")" ]; then
+    if [ ! -d "$workspace_dir/repo" ] || [ -z "$(ls -A "$workspace_dir/repo" 2>/dev/null)" ]; then
         echo "Cloning $url to $workspace_dir/repo"
         if ! git clone "$url" "$workspace_dir/repo"; then
             echo "$(date): Failed to clone $url" >> "$WORKSPACES_DIR/packaging.log"
@@ -266,7 +326,13 @@ run_packaging_script() {
     else
         # Update repository
         echo "Updating $url in $workspace_dir/repo"
-        if ! (cd "$workspace_dir/repo" && git fetch && git reset --hard origin/main 2>/dev/null || git reset --hard origin/master 2>/dev/null || git pull); then
+        if ! (cd "$workspace_dir/repo" && git remote -v && git fetch origin && 
+              git reset --hard origin/$(git remote show origin | sed -n '/HEAD branch/s/.*: //p') 2>/dev/null || 
+              git reset --hard origin/main 2>/dev/null || 
+              git reset --hard origin/master 2>/dev/null || 
+              git pull origin $(git remote show origin | sed -n '/HEAD branch/s/.*: //p') 2>/dev/null || 
+              git pull origin main 2>/dev/null || 
+              git pull origin master 2>/dev/null); then
             echo "$(date): Failed to update $url" >> "$WORKSPACES_DIR/packaging.log"
             update_status "$repo_name" "🔄 IN PROGRESS" "Repo update failed, will retry with fresh clone"
             # Remove the repo and try to clone again
@@ -300,18 +366,31 @@ run_packaging_script() {
     
     if [ $success -eq 0 ]; then
         # Mark as failed and create human help request with more detailed information
-        local error_details=$(cat "$workspace_dir/error.log" | head -20 | sed 's/"/\\"/g' | tr '\n' ' ')
+        local error_details=""
+        if [ -f "$workspace_dir/error.log" ]; then
+            error_details=$(cat "$workspace_dir/error.log" 2>/dev/null | head -20 | sed 's/"/\\"/g; s/[\t$`]/ /g; s/secret[^[:space:]]*/[REDACTED]/gi; s/token[^[:space:]]*/[REDACTED]/gi; s/key[^[:space:]]*/[REDACTED]/gi' | tr '\n' ' ')
+        fi
         update_status "$repo_name" "🛑 FAILED" "Failed after $MAX_RETRIES attempts. Error: $error_details"
-        # Create a detailed human help file
+        # Create a detailed human help file with proper sanitization
-        cat > "$HUMAN_HELP_DIR/STATUS-HumanHelp-$repo_name" << EOF
+        {
-Application: $repo_name
+            echo "Application: $repo_name"
-URL: $url
+            echo "URL: $url"
-Issue: Failed to package after $MAX_RETRIES attempts
+            echo "Issue: Failed to package after $MAX_RETRIES attempts"
-Date: $(date)
+            echo "Date: $(date)"
-Error Details:
+            echo "Error Details:"
-$(cat "$workspace_dir/error.log")
+            if [ -f "$workspace_dir/error.log" ]; then
-EOF
+                # Sanitize the error log to remove potential sensitive information
+                cat "$workspace_dir/error.log" 2>/dev/null | sed 's/secret[^[:space:]]*/[REDACTED]/gi; s/token[^[:space:]]*/[REDACTED]/gi; s/key[^[:space:]]*/[REDACTED]/gi; s/[A-Za-z0-9]\{20,\}/[REDACTED]/g'
+            else
+                echo "No error log file found"
+            fi
+        } > "$HUMAN_HELP_DIR/STATUS-HumanHelp-$repo_name"
         echo "$(date): Marked $repo_name for human help after $MAX_RETRIES failed attempts" >> "$WORKSPACES_DIR/packaging.log"
+    else
+        # On success, clean up error log if it exists
+        if [ -f "$workspace_dir/error.log" ]; then
+            rm -f "$workspace_dir/error.log"
+        fi
     fi
 }
 
@@ -460,6 +539,11 @@ main() {
     
     # Process applications in batches of 3 for parallel execution
     local i=0
+    local batch_count=0
+    
+    # Add heartbeat file to track process is alive
+    local heartbeat_file="$WORKSPACES_DIR/process-heartbeat-$(date +%s).tmp"
+    touch "$heartbeat_file"
     
     while [ $i -lt $total ]; do
         # Process up to 3 applications in parallel
@@ -476,9 +560,31 @@ main() {
         # Wait for all background processes to complete
         wait
         
+        # Update heartbeat to show process is active
+        touch "$heartbeat_file"
+        
         # Perform audit after each batch
         perform_audit
         
+        # Perform resource cleanup every 10 batches to prevent resource exhaustion during long runs
+        ((batch_count++))
+        if [ $((batch_count % 10)) -eq 0 ]; then
+            log_message "INFO" "Performing periodic resource cleanup after batch $batch_count"
+            cleanup_docker_resources
+            cleanup_file_resources
+        fi
+        
+        # Check for critical errors that might require stopping
+        local failed_count_current=$(grep -o "🛑 FAILED" "$STATUS_FILE" | wc -l)
+        local total_failed_since_start=$((failed_count_current))
+        
+        # Optional: Add logic for stopping if too many failures occur in a row
+        # This is commented out but can be enabled if needed
+        # if [ $total_failed_since_start -gt 50 ]; then
+        #     log_message "ERROR" "Too many failures (${total_failed_since_start}), stopping process"
+        #     break
+        # fi
+        
         # Update i for the next batch
         i=$end
         
@@ -509,6 +615,9 @@ $(date)
 EOF
     done
     
+    # Final cleanup
+    rm -f "$heartbeat_file" 2>/dev/null || true
+    
     # Final audit
     perform_audit
     log_message "INFO" "Completed Cloudron packaging process"

CloudronStack/output/package-functions.sh

@@ -26,6 +26,38 @@ package_nodejs_app() {
         repo_path="unknown-user/$app_name"
     fi
     
+    # Create .dockerignore to exclude sensitive files
+    cat > .dockerignore << 'DOCKERIGNORE_EOF'
+.git
+.gitignore
+*.env
+*.key
+*.pem
+*.crt
+*.cert
+Dockerfile
+.dockerignore
+*.log
+node_modules
+__pycache__
+.pytest_cache
+.coverage
+.vscode
+.idea
+*.swp
+*.swo
+.DS_Store
+Thumbs.db
+README.md
+CHANGELOG.md
+LICENSE
+AUTHORS
+CONTRIBUTORS
+config/
+secrets/
+tokens/
+DOCKERIGNORE_EOF
+    
     # Create Cloudron manifest
     cat > app.manifest << EOF
 {
@@ -87,8 +119,8 @@ EXPOSE $port
 CMD $start_cmd
 EOF
     
-    # Build Docker image
+    # Build Docker image with a more unique name to avoid conflicts in parallel execution
-    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}:latest"
+    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}-$(date +%s%N | cut -c1-10):latest"
     if ! docker build -t "$docker_image" .; then
         echo "Failed to build Docker image for $app_name"
         return 1
@@ -101,7 +133,7 @@ EOF
     fi
     
     # Save the Docker image as an artifact
-    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}.tar.gz"
+    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}-$(date +%s).tar.gz"
     return 0
 }
 
@@ -126,6 +158,38 @@ package_python_app() {
         repo_path="unknown-user/$app_name"
     fi
     
+    # Create .dockerignore to exclude sensitive files
+    cat > .dockerignore << 'DOCKERIGNORE_EOF'
+.git
+.gitignore
+*.env
+*.key
+*.pem
+*.crt
+*.cert
+Dockerfile
+.dockerignore
+*.log
+node_modules
+__pycache__
+.pytest_cache
+.coverage
+.vscode
+.idea
+*.swp
+*.swo
+.DS_Store
+Thumbs.db
+README.md
+CHANGELOG.md
+LICENSE
+AUTHORS
+CONTRIBUTORS
+config/
+secrets/
+tokens/
+DOCKERIGNORE_EOF
+    
     # Create Cloudron manifest
     cat > app.manifest << EOF
 {
@@ -187,8 +251,8 @@ EXPOSE $port
 CMD $start_cmd
 EOF
     
-    # Build Docker image
+    # Build Docker image with a more unique name to avoid conflicts in parallel execution
-    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}:latest"
+    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}-$(date +%s%N | cut -c1-10):latest"
     if ! docker build -t "$docker_image" .; then
         echo "Failed to build Docker image for $app_name"
         return 1
@@ -201,7 +265,7 @@ EOF
     fi
     
     # Save the Docker image as an artifact
-    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}.tar.gz"
+    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}-$(date +%s).tar.gz"
     return 0
 }
 
@@ -226,6 +290,38 @@ package_php_app() {
         repo_path="unknown-user/$app_name"
     fi
     
+    # Create .dockerignore to exclude sensitive files
+    cat > .dockerignore << 'DOCKERIGNORE_EOF'
+.git
+.gitignore
+*.env
+*.key
+*.pem
+*.crt
+*.cert
+Dockerfile
+.dockerignore
+*.log
+node_modules
+__pycache__
+.pytest_cache
+.coverage
+.vscode
+.idea
+*.swp
+*.swo
+.DS_Store
+Thumbs.db
+README.md
+CHANGELOG.md
+LICENSE
+AUTHORS
+CONTRIBUTORS
+config/
+secrets/
+tokens/
+DOCKERIGNORE_EOF
+    
     # Create Cloudron manifest
     cat > app.manifest << EOF
 {
@@ -267,8 +363,8 @@ EXPOSE 80
 CMD ["apache2-foreground"]
 EOF
     
-    # Build Docker image
+    # Build Docker image with a more unique name to avoid conflicts in parallel execution
-    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}:latest"
+    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}-$(date +%s%N | cut -c1-10):latest"
     if ! docker build -t "$docker_image" .; then
         echo "Failed to build Docker image for $app_name"
         return 1
@@ -281,7 +377,7 @@ EOF
     fi
     
     # Save the Docker image as an artifact
-    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}.tar.gz"
+    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}-$(date +%s).tar.gz"
     return 0
 }
 
@@ -306,6 +402,38 @@ package_go_app() {
         repo_path="unknown-user/$app_name"
     fi
     
+    # Create .dockerignore to exclude sensitive files
+    cat > .dockerignore << 'DOCKERIGNORE_EOF'
+.git
+.gitignore
+*.env
+*.key
+*.pem
+*.crt
+*.cert
+Dockerfile
+.dockerignore
+*.log
+node_modules
+__pycache__
+.pytest_cache
+.coverage
+.vscode
+.idea
+*.swp
+*.swo
+.DS_Store
+Thumbs.db
+README.md
+CHANGELOG.md
+LICENSE
+AUTHORS
+CONTRIBUTORS
+config/
+secrets/
+tokens/
+DOCKERIGNORE_EOF
+    
     # Create Cloudron manifest
     cat > app.manifest << EOF
 {
@@ -358,8 +486,8 @@ EXPOSE 8080
 CMD ["./$binary_name"]
 EOF
     
-    # Build Docker image
+    # Build Docker image with a more unique name to avoid conflicts in parallel execution
-    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}:latest"
+    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}-$(date +%s%N | cut -c1-10):latest"
     if ! docker build -t "$docker_image" .; then
         echo "Failed to build Docker image for $app_name"
         return 1
@@ -372,7 +500,7 @@ EOF
     fi
     
     # Save the Docker image as an artifact
-    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}.tar.gz"
+    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}-$(date +%s).tar.gz"
     return 0
 }
 
@@ -389,22 +517,39 @@ smoke_test_docker_image() {
         return 1
     fi
     
-    # Run the container briefly to test if it starts correctly
+    # Sanitize the app name for container name
-    local container_name="smoke-test-${app_name//[^a-zA-Z0-9]/-}-$(date +%s)"
+    local clean_app_name=$(printf '%s\n' "$app_name" | sed 's/[^a-zA-Z0-9]/-/g' | tr -cd '[:alnum:]-')
+    local container_name="smoke-test-${clean_app_name:0:50}-$(date +%s)"
+    
+    # Validate container name doesn't exceed Docker limits
+    if [ ${#container_name} -gt 63 ]; then
+        container_name="${container_name:0:63}"
+    fi
     
     # Run without specific health check initially, just see if container starts and stays running
     if ! docker run -d --name "$container_name" "$docker_image" >/dev/null 2>&1; then
         echo "Failed to start container for $app_name during smoke test"
-        docker rm "$container_name" >/dev/null 2>&1 || true
+        # Remove container in case it was partially created
+        docker rm -f "$container_name" >/dev/null 2>&1 || true
         return 1
     fi
     
-    # Wait a few seconds to see if the container stays running
+    # Give the container time to start - wait with periodic checks
-    sleep 15
+    local max_wait=30  # Maximum wait time in seconds
+    local waited=0
+    local container_status="not_started"
     
-    # Check if the container is still running
+    while [ $waited -lt $max_wait ]; do
-    local container_status
+        container_status=$(docker inspect -f '{{.State.Status}}' "$container_name" 2>/dev/null || echo "not_found")
-    container_status=$(docker inspect -f '{{.State.Status}}' "$container_name" 2>/dev/null || echo "not_found")
+        if [ "$container_status" = "running" ]; then
+            break
+        elif [ "$container_status" = "exited" ] || [ "$container_status" = "dead" ]; then
+            # Container exited early, no need to wait longer
+            break
+        fi
+        sleep 2
+        waited=$((waited + 2))
+    done
     
     if [ "$container_status" = "running" ]; then
         echo "Smoke test passed for $app_name - container is running"
@@ -414,11 +559,11 @@ smoke_test_docker_image() {
         return 0
     else
         # Container stopped or crashed, get logs for debugging
-        echo "Container for $app_name did not stay running during smoke test (status: $container_status)"
+        echo "Container for $app_name did not stay running during smoke test (status: $container_status after ${waited}s)"
         echo "Container logs:"
-        docker logs "$container_name" 2>&1 | head -30
+        docker logs "$container_name" 2>/dev/null | head -30 || echo "Could not retrieve container logs"
-        docker stop "$container_name" >/dev/null 2>&1 || true
+        # Force remove the container
-        docker rm "$container_name" >/dev/null 2>&1 || true
+        docker rm -f "$container_name" >/dev/null 2>&1 || true
         return 1
     fi
 }
@@ -461,6 +606,38 @@ package_generic_app() {
     
     cd "$app_dir"
     
+    # Create .dockerignore to exclude sensitive files
+    cat > .dockerignore << 'DOCKERIGNORE_EOF'
+.git
+.gitignore
+*.env
+*.key
+*.pem
+*.crt
+*.cert
+Dockerfile
+.dockerignore
+*.log
+node_modules
+__pycache__
+.pytest_cache
+.coverage
+.vscode
+.idea
+*.swp
+*.swo
+.DS_Store
+Thumbs.db
+README.md
+CHANGELOG.md
+LICENSE
+AUTHORS
+CONTRIBUTORS
+config/
+secrets/
+tokens/
+DOCKERIGNORE_EOF
+    
     # Extract username/repo from the app_url for manifest
     local repo_path
     if [[ "$app_url" == *"github.com"* ]]; then
@@ -565,8 +742,8 @@ EXPOSE 8080
 CMD ["/run-app.sh"]
 DOCKERFILE_EOF
     
-    # Build Docker image
+    # Build Docker image with a more unique name to avoid conflicts in parallel execution
-    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}:latest"
+    local docker_image="tsysdevstack-cloudron-buildtest-${app_name//[^a-zA-Z0-9]/-}-$(date +%s%N | cut -c1-10):latest"
     if ! docker build -t "$docker_image" .; then
         echo "Failed to build Docker image for $app_name"
         return 1
@@ -579,6 +756,6 @@ DOCKERFILE_EOF
     fi
     
     # Save the Docker image as an artifact
-    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}.tar.gz"
+    docker save "$docker_image" | gzip > "$artifact_dir/${app_name//[^a-zA-Z0-9]/-}-$(date +%s).tar.gz"
     return 0
 }

CloudronStack/test_add_url.sh

@@ -0,0 +1,24 @@
+#!/bin/bash
+
+# Test script to verify the add_git_url functionality
+
+# Source the master script to get access to its functions
+source /home/localuser/TSYSDevStack/CloudronStack/output/master-control-script.sh
+
+# Test adding a new URL
+echo "Testing add_git_url function..."
+add_git_url "https://github.com/testuser/testrepo"
+
+# Check the git URL list file to see if the URL was added
+echo "Contents of GitUrlList.txt after adding:"
+cat /home/localuser/TSYSDevStack/CloudronStack/collab/GitUrlList.txt
+
+# Test adding the same URL again (should not duplicate)
+echo "Testing adding the same URL again (should not duplicate)..."
+add_git_url "https://github.com/testuser/testrepo"
+
+# Add another URL for good measure
+echo "Testing adding a second URL..."
+add_git_url "https://github.com/anotheruser/anotherrepo"
+
+echo "Test completed successfully!"

ToolboxStack/output/toolbox-base/Dockerfile

@@ -69,7 +69,7 @@ RUN curl -sSfL https://raw.githubusercontent.com/aquaproj/aqua-installer/v2.3.1/
 RUN curl -sSfL https://mise.jdx.dev/install.sh | env MISE_INSTALL_PATH=/usr/local/bin/mise MISE_INSTALL_HELP=0 sh
 
 # Install Node.js via mise to enable npm package installation
-RUN mise install node@lts && mise global node@lts
+RUN mise install node@22.13.0 && mise global node@22.13.0
 
 # Create non-root user with matching UID/GID for host mapping
 RUN if getent passwd "${USER_ID}" >/dev/null; then \
@@ -100,20 +100,21 @@ RUN su - "${USERNAME}" -c 'git clone --depth=1 https://github.com/ohmyzsh/ohmyzs
     && su - "${USERNAME}" -c 'printf "\nset -gx AQUA_GLOBAL_CONFIG \$HOME/.config/aquaproj-aqua/aqua.yaml\n# Shell prompt and runtime manager\nstarship init fish | source\nmise activate fish | source\ndirenv hook fish | source\nzoxide init fish | source\n" >> ~/.config/fish/config.fish'
 
 # Install Node.js for the toolbox user and set up the environment
-RUN su - "${USERNAME}" -c 'mise install node@lts && mise use -g node@lts'
+RUN su - "${USERNAME}" -c 'mise install node@22.13.0 && mise use -g node@22.13.0'
 
 COPY aqua.yaml /tmp/aqua.yaml
 
+# Install aqua packages at both root and user level to ensure they're baked into the image
 RUN chown "${USER_ID}:${GROUP_ID}" /tmp/aqua.yaml \
     && su - "${USERNAME}" -c 'mkdir -p ~/.config/aquaproj-aqua' \
     && su - "${USERNAME}" -c 'cp /tmp/aqua.yaml ~/.config/aquaproj-aqua/aqua.yaml' \
-    && su - "${USERNAME}" -c 'AQUA_GLOBAL_CONFIG=~/.config/aquaproj-aqua/aqua.yaml aqua install'
+    && AQUA_GLOBAL_CONFIG=/tmp/aqua.yaml aqua install
 
 # Install AI CLI tools via npm using mise to ensure Node.js is available
-RUN mise exec -- npm install -g @just-every/code @qwen-code/qwen-code @google/gemini-cli @openai/codex opencode-ai@latest
+RUN mise exec -- npm install -g @just-every/code@0.4.6 @qwen-code/qwen-code@0.1.1 @google/gemini-cli@0.11.0 @openai/codex@0.50.0 opencode-ai@0.15.29
 
 # Install the same AI CLI tools for the toolbox user so they are available in the container runtime
-RUN su - "${USERNAME}" -c 'mise exec -- npm install -g @just-every/code @qwen-code/qwen-code @google/gemini-cli @openai/codex opencode-ai@latest' && \
+RUN su - "${USERNAME}" -c 'mise exec -- npm install -g @just-every/code@0.4.6 @qwen-code/qwen-code@0.1.1 @google/gemini-cli@0.11.0 @openai/codex@0.50.0 opencode-ai@0.15.29' && \
     # Ensure mise shims are properly generated for the installed tools
     su - "${USERNAME}" -c 'mise reshim'
 

ToolboxStack/output/toolbox-base/PROMPT

@@ -8,9 +8,11 @@ Context snapshot (toolbox-base):
 
 Current state:
 - Dockerfile installs shell tooling (zsh/bash/fish with Starship & oh-my-zsh), core CLI utilities (curl, wget, git, tmux, screen, htop, btop, entr, httpie, tea, bc, etc.), build-essential + headers, aqua, and mise. Aqua is pinned to specific versions for gh, lazygit, direnv, git-delta, zoxide, just, yq, xh, curlie, chezmoi, shfmt, shellcheck, hadolint, uv, watchexec; direnv/zoxide hooks are enabled for all shells (direnv logging muted).
-- aqua-managed CLI inventory lives in README.md alongside usage notes; tea installs via direct download with checksum verification (TEA_VERSION build arg).
+- aqua-managed CLI inventory lives in README.md alongside usage notes; tea installs via direct download with checksum verification (TEA_VERSION build arg). 
-- mise handles language/tool runtimes; activation wired into zsh, bash, and fish.
+- aqua packages are baked into the image during the build process for consistency, reproducibility and performance.
-- AI CLI tools (just-every/code, QwenLM/qwen-code, google-gemini/gemini-cli, openai/codex, sst/opencode) are installed via npm and available in the PATH.
+- mise handles language/tool runtimes; activation wired into zsh, bash, and fish. Node.js is pinned to version 22.13.0 for build consistency.
+- AI CLI tools (just-every/code, QwenLM/qwen-code, google-gemini/gemini-cli, openai/codex, sst/opencode) are installed via npm and baked into the image with pinned versions.
+- Host directories for AI tool configuration and cache are mounted to maintain persistent settings across container runs.
 - docker-compose.yml runs container with host UID/GID, `sleep infinity`, and docker socket mount; run via run.sh/build.sh. Host directories `~/.local/share/mise` and `~/.cache/mise` are mounted for persistent runtimes.
 - Devcontainer config ( .devcontainer/devcontainer.json ) references the compose service.
 - Documentation: README.md (tooling inventory & workflow) and this PROMPT must stay current, and both should stay aligned with the shared guidance in ../PROMPT. README also notes that build.sh now uses docker buildx with a local cache directory and documents the `dev` → `release-current` → semantic tagging workflow.

ToolboxStack/output/toolbox-base/README.md

@@ -46,9 +46,10 @@ The compose service mounts the current repo to `/workspace` (read/write) and run
 | **Shells & Prompts** | 🐚 `zsh` • 🐟 `fish` • 🧑‍💻 `bash` • ⭐ `starship` • 💎 `oh-my-zsh` | Starship prompt enabled for all shells; oh-my-zsh configured with `git` + `fzf` plugins. |
 | **Runtime & CLI Managers** | 🪄 `mise` • 💧 `aqua` | `mise` handles language/tool runtimes (activation wired into zsh/bash/fish); `aqua` manages standalone CLIs with config at `~/.config/aquaproj-aqua/aqua.yaml`. |
 | **Core CLI Utilities** | 📦 `curl` • 📥 `wget` • 🔐 `ca-certificates` • 🧭 `git` • 🔧 `build-essential` + headers (`pkg-config`, `libssl-dev`, `zlib1g-dev`, `libffi-dev`, `libsqlite3-dev`, `libreadline-dev`, `make`) • 🔍 `ripgrep` • 🧭 `fzf` • 📁 `fd` • 📖 `bat` • 🔗 `openssh-client` • 🧵 `tmux` • 🖥️ `screen` • 📈 `htop` • 📉 `btop` • ♻️ `entr` • 📊 `jq` • 🌐 `httpie` • ☕ `tea` • 🧮 `bc` | Provides ergonomic defaults plus toolchain deps for compiling runtimes (no global language installs). |
-| **Aqua-Managed CLIs** | 🐙 `gh` • 🌀 `lazygit` • 🪄 `direnv` • 🎨 `git-delta` • 🧭 `zoxide` • 🧰 `just` • 🧾 `yq` • ⚡ `xh` • 🌍 `curlie` • 🏠 `chezmoi` • 🛠️ `shfmt` • ✅ `shellcheck` • 🐳 `hadolint` • 🐍 `uv` • 🔁 `watchexec` | Extend via `~/.config/aquaproj-aqua/aqua.yaml` and run `aqua install`. Direnv logging is muted and hooks for direnv/zoxide are pre-configured for zsh, bash, and fish. |
+| **Aqua-Managed CLIs** | 🐙 `gh` • 🌀 `lazygit` • 🪄 `direnv` • 🎨 `git-delta` • 🧭 `zoxide` • 🧰 `just` • 🧾 `yq` • ⚡ `xh` • 🌍 `curlie` • 🏠 `chezmoi` • 🛠️ `shfmt` • ✅ `shellcheck` • 🐳 `hadolint` • 🐍 `uv` • 🔁 `watchexec` | Extend via `~/.config/aquaproj-aqua/aqua.yaml`. These packages are baked into the image at build time for consistency and reproducibility. Direnv logging is muted and hooks for direnv/zoxide are pre-configured for zsh, bash, and fish. |
 | **AI CLI Tools** | 🧠 `@just-every/code` • 🤖 `@qwen-code/qwen-code` • 💎 `@google/gemini-cli` • 🔮 `@openai/codex` • 🌐 `opencode-ai` | AI-powered command-line tools for enhanced development workflows. Node.js is installed via mise to support npm package installation. |
 | **Container Workflow** | 🐳 Docker socket mount (`/var/run/docker.sock`) | Enables Docker CLIs inside the container; host Docker daemon required. |
+| **AI Tool Configuration** | 🧠 Host directories for AI tools | Host directories for AI tool configuration and cache are mounted to maintain persistent settings and data across container runs. |
 | **Runtime Environment** | 👤 Non-root user `toolbox` (UID/GID mapped) • 🗂️ `/workspace` mount | Maintains host permissions and isolates artifacts under `artifacts/ToolboxStack/toolbox-base`. |
 
 ---

ToolboxStack/output/toolbox-base/build.sh

@@ -2,6 +2,17 @@
 
 set -euo pipefail
 
+# Validate dependencies
+if ! command -v docker &> /dev/null; then
+    echo "Error: docker is required but not installed." >&2
+    exit 1
+fi
+
+if ! docker buildx version &> /dev/null; then
+    echo "Error: docker buildx is required but not available." >&2
+    exit 1
+fi
+
 IMAGE_NAME="tsysdevstack-toolboxstack-toolbox-base"
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
 
@@ -20,13 +31,16 @@ echo "Building ${IMAGE_NAME} with UID=${USER_ID} GID=${GROUP_ID} USERNAME=${USER
 echo "Primary tag: ${TAG}"
 
 if ! docker buildx inspect "${BUILDER_NAME}" >/dev/null 2>&1; then
+    echo "Creating builder: ${BUILDER_NAME}"
     docker buildx create --driver docker-container --name "${BUILDER_NAME}" --use >/dev/null
 else
+    echo "Using existing builder: ${BUILDER_NAME}"
     docker buildx use "${BUILDER_NAME}" >/dev/null
 fi
 
 mkdir -p "${CACHE_DIR}"
 
+echo "Starting build..."
 docker buildx build \
     --builder "${BUILDER_NAME}" \
     --load \
@@ -56,3 +70,13 @@ if [[ "${PUSH}" == "true" ]]; then
         docker push "${IMAGE_NAME}:${RELEASE_TAG}"
     fi
 fi
+
+echo "Build completed successfully."
+
+# Run security scan if TRIVY is available
+if command -v trivy &> /dev/null; then
+    echo "Running security scan with Trivy..."
+    trivy image --exit-code 0 --severity HIGH,CRITICAL "${IMAGE_NAME}:${TAG}"
+else
+    echo "Trivy not found. Install Trivy to perform security scanning."
+fi

ToolboxStack/output/toolbox-base/docker-compose.yml

@@ -18,3 +18,14 @@ services:
       - .:/workspace:rw
       - ${HOME}/.local/share/mise:/home/toolbox/.local/share/mise:rw
       - ${HOME}/.cache/mise:/home/toolbox/.cache/mise:rw
+      # AI CLI tool configuration and cache directories
+      - ${HOME}/.config/openai:/home/toolbox/.config/openai:rw
+      - ${HOME}/.config/gemini:/home/toolbox/.config/gemini:rw
+      - ${HOME}/.config/qwen:/home/toolbox/.config/qwen:rw
+      - ${HOME}/.config/code:/home/toolbox/.config/code:rw
+      - ${HOME}/.config/opencode:/home/toolbox/.config/opencode:rw
+      - ${HOME}/.cache/openai:/home/toolbox/.cache/openai:rw
+      - ${HOME}/.cache/gemini:/home/toolbox/.cache/gemini:rw
+      - ${HOME}/.cache/qwen:/home/toolbox/.cache/qwen:rw
+      - ${HOME}/.cache/code:/home/toolbox/.cache/code:rw
+      - ${HOME}/.cache/opencode:/home/toolbox/.cache/opencode:rw

ToolboxStack/output/toolbox-base/run.sh

@@ -2,6 +2,17 @@
 
 set -euo pipefail
 
+# Validate dependencies
+if ! command -v docker &> /dev/null; then
+    echo "Error: docker is required but not installed." >&2
+    exit 1
+fi
+
+if ! command -v docker compose &> /dev/null; then
+    echo "Error: docker compose is required but not installed." >&2
+    exit 1
+fi
+
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
 COMPOSE_FILE="${SCRIPT_DIR}/docker-compose.yml"
 
@@ -19,15 +30,21 @@ ACTION="${1:-up}"
 shift || true
 
 if [[ "${ACTION}" == "up" ]]; then
+    # Create necessary directories for the toolbox tools
     mkdir -p "${HOME}/.local/share/mise" "${HOME}/.cache/mise"
+    mkdir -p "${HOME}/.config" "${HOME}/.local/share"
+    mkdir -p "${HOME}/.cache/openai" "${HOME}/.cache/gemini" "${HOME}/.cache/qwen" "${HOME}/.cache/code" "${HOME}/.cache/opencode"
+    mkdir -p "${HOME}/.config/openai" "${HOME}/.config/gemini" "${HOME}/.config/qwen" "${HOME}/.config/code" "${HOME}/.config/opencode"
 fi
 
 case "${ACTION}" in
     up)
         docker compose -f "${COMPOSE_FILE}" up --build --detach "$@"
+        echo "Container started. Use 'docker exec -it tsysdevstack-toolboxstack-toolbox-base zsh' to access the shell."
         ;;
     down)
         docker compose -f "${COMPOSE_FILE}" down "$@"
+        echo "Container stopped."
         ;;
     *)
         echo "Usage: $0 [up|down] [additional docker compose args]" >&2

ToolboxStack/output/toolbox-template/Dockerfile

@@ -0,0 +1,25 @@
+# Extend from the toolbox-base image
+FROM tsysdevstack-toolboxstack-toolbox-base:release-current
+
+# Set build arguments (these can be overridden at build time)
+ARG USER_ID=1000
+ARG GROUP_ID=1000
+ARG USERNAME=toolbox
+
+# Ensure the non-root user exists with the correct UID/GID
+RUN if getent passwd "${USER_ID}" >/dev/null; then \
+        existing_user="$(getent passwd "${USER_ID}" | cut -d: -f1)"; \
+        userdel --remove "${existing_user}" 2>/dev/null || true; \
+    fi \
+    && if ! getent group "${GROUP_ID}" >/dev/null; then \
+        groupadd --gid "${GROUP_ID}" "${USERNAME}"; \
+    fi \
+    && useradd --uid "${USER_ID}" --gid "${GROUP_ID}" --shell /usr/bin/zsh --create-home "${USERNAME}" \
+    && usermod -aG sudo "${USERNAME}" 2>/dev/null || true
+
+# Switch to the non-root user
+USER ${USERNAME}
+WORKDIR /workspace
+
+# Default command
+CMD ["/usr/bin/zsh"]

ToolboxStack/output/toolbox-template/PROMPT

@@ -5,21 +5,23 @@ You are Codex, collaborating with a human on the TSYSDevStack ToolboxStack proje
   - Start each session by reading it (`cat SEED`) and summarize progress or adjustments here in PROMPT.
 
 Context snapshot ({{toolbox_name}}):
-- Working directory: artifacts/ToolboxStack/{{toolbox_name}}
+- Working directory: TSYSDevStack/ToolboxStack/{{toolbox_name}}
-- Image: tsysdevstack-toolboxstack-{{toolbox_name}} (Ubuntu 24.04)
+- Image: extends from tsysdevstack-toolboxstack-toolbox-base (Ubuntu 24.04 base)
 - Container user: toolbox (non-root, UID/GID mapped to host)
 - Mounted workspace: current repo at /workspace (rw)
 
 Current state:
-- Seed items above still need to be translated into Dockerfile/tooling work.
+- Extends from the standard toolbox-base image, inheriting shell tooling (zsh/bash/fish with Starship & oh-my-zsh), core CLI utilities, aqua, and mise.
+- aqua packages are baked into the base image during the build process for consistency and reproducibility.
+- AI CLI tools from the base are available, with host directories mounted for configuration persistence.
 - See ../PROMPT for shared toolbox contribution expectations (documentation sync, build cadence, commit/push discipline, Conventional Commits, atomic history).
 
 Collaboration checklist:
-1. Translate SEED goals into concrete tooling decisions; mirror outcomes in README.md and this PROMPT (do not rewrite SEED unless the scope resets).
+1. Build upon the base tooling with {{toolbox_name}}-specific additions; mirror outcomes in README.md and this PROMPT.
 2. Prefer aqua-managed CLIs and mise-managed runtimes for reproducibility.
 3. After each tooling change, update README/PROMPT, run ./build.sh, commit (Conventional Commit message, focused diff), and push only once the build succeeds per ../PROMPT.
 4. Record verification steps (build/test commands) as they are performed.
 5. Maintain UID/GID mapping and non-root execution.
 
 Active focus:
-- Initialize {{toolbox_name}} using the toolbox-template scaffolding; evolve the Dockerfile/tooling inventory to satisfy the SEED goals.
+- Initialize {{toolbox_name}} using the toolbox-template scaffolding; evolve the Dockerfile/tooling inventory to satisfy the SEED goals while maintaining consistency with the base image.

ToolboxStack/output/toolbox-template/SEED

@@ -1,3 +1,6 @@
-- TODO: describe what this toolbox should provide (languages, CLIs, workflows).
+- This toolbox extends from the standard toolbox-base image, inheriting all base tooling (shells, CLIs, package managers).
-- TODO: list required base image modifications or additional mounts.
+- Add {{toolbox_name}}-specific tools via aqua.yaml, Dockerfile, or mise configurations.
-- TODO: note verification or testing expectations specific to this toolbox.
+- Document any additional host directory mounts needed in docker-compose.yml.
+- Ensure all tooling is compatible with the non-root toolbox user and UID/GID mapping.
+- Update README.md to document {{toolbox_name}}-specific features and tooling.
+- Follow the same build and run patterns as the base image for consistency.

ToolboxStack/output/toolbox-template/aqua.yaml

@@ -0,0 +1,8 @@
+version: 1.0.0
+registries:
+  - type: standard
+    ref: v4.431.0
+packages:
+  # Add additional packages specific to your toolbox here
+  # Example:
+  # - name: cli/cli@v2.82.1

ToolboxStack/output/toolbox-template/build.sh

@@ -2,7 +2,20 @@
 
 set -euo pipefail
 
-IMAGE_NAME="tsysdevstack-toolboxstack-{{toolbox_name}}"
+# Validate dependencies
+if ! command -v docker &> /dev/null; then
+    echo "Error: docker is required but not installed." >&2
+    exit 1
+fi
+
+if ! docker buildx version &> /dev/null; then
+    echo "Error: docker buildx is required but not available." >&2
+    exit 1
+fi
+
+# Get the toolbox name from the directory name (or you can pass it as an argument)
+TOOLBOX_NAME="${TOOLBOX_NAME_OVERRIDE:-$(basename "$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)")}"
+IMAGE_NAME="tsysdevstack-toolboxstack-${TOOLBOX_NAME#toolbox-}"
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
 
 USER_ID="${USER_ID_OVERRIDE:-$(id -u)}"
@@ -15,13 +28,16 @@ CACHE_DIR="${SCRIPT_DIR}/.build-cache"
 echo "Building ${IMAGE_NAME} with UID=${USER_ID} GID=${GROUP_ID} USERNAME=${USERNAME}"
 
 if ! docker buildx inspect "${BUILDER_NAME}" >/dev/null 2>&1; then
+    echo "Creating builder: ${BUILDER_NAME}"
     docker buildx create --driver docker-container --name "${BUILDER_NAME}" --use >/dev/null
 else
+    echo "Using existing builder: ${BUILDER_NAME}"
     docker buildx use "${BUILDER_NAME}" >/dev/null
 fi
 
 mkdir -p "${CACHE_DIR}"
 
+echo "Starting build..."
 docker buildx build \
     --builder "${BUILDER_NAME}" \
     --load \
@@ -34,3 +50,13 @@ docker buildx build \
     --cache-to "type=local,dest=${CACHE_DIR},mode=max" \
     --tag "${IMAGE_NAME}" \
     "${SCRIPT_DIR}"
+
+echo "Build completed successfully."
+
+# Run security scan if TRIVY is available
+if command -v trivy &> /dev/null; then
+    echo "Running security scan with Trivy..."
+    trivy image --exit-code 0 --severity HIGH,CRITICAL "${IMAGE_NAME}"
+else
+    echo "Trivy not found. Install Trivy to perform security scanning."
+fi

ToolboxStack/output/toolbox-template/docker-compose.yml

@@ -18,3 +18,14 @@ services:
       - .:/workspace:rw
       - ${HOME}/.local/share/mise:/home/toolbox/.local/share/mise:rw
       - ${HOME}/.cache/mise:/home/toolbox/.cache/mise:rw
+      # AI CLI tool configuration and cache directories
+      - ${HOME}/.config/openai:/home/toolbox/.config/openai:rw
+      - ${HOME}/.config/gemini:/home/toolbox/.config/gemini:rw
+      - ${HOME}/.config/qwen:/home/toolbox/.config/qwen:rw
+      - ${HOME}/.config/code:/home/toolbox/.config/code:rw
+      - ${HOME}/.config/opencode:/home/toolbox/.config/opencode:rw
+      - ${HOME}/.cache/openai:/home/toolbox/.cache/openai:rw
+      - ${HOME}/.cache/gemini:/home/toolbox/.cache/gemini:rw
+      - ${HOME}/.cache/qwen:/home/toolbox/.cache/qwen:rw
+      - ${HOME}/.cache/code:/home/toolbox/.cache/code:rw
+      - ${HOME}/.cache/opencode:/home/toolbox/.cache/opencode:rw

ToolboxStack/output/toolbox-template/run.sh

@@ -2,6 +2,17 @@
 
 set -euo pipefail
 
+# Validate dependencies
+if ! command -v docker &> /dev/null; then
+    echo "Error: docker is required but not installed." >&2
+    exit 1
+fi
+
+if ! command -v docker compose &> /dev/null; then
+    echo "Error: docker compose is required but not installed." >&2
+    exit 1
+fi
+
 SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
 COMPOSE_FILE="${SCRIPT_DIR}/docker-compose.yml"
 
@@ -18,15 +29,21 @@ ACTION="${1:-up}"
 shift || true
 
 if [[ "${ACTION}" == "up" ]]; then
+    # Create necessary directories for the toolbox tools
     mkdir -p "${HOME}/.local/share/mise" "${HOME}/.cache/mise"
+    mkdir -p "${HOME}/.config" "${HOME}/.local/share"
+    mkdir -p "${HOME}/.cache/openai" "${HOME}/.cache/gemini" "${HOME}/.cache/qwen" "${HOME}/.cache/code" "${HOME}/.cache/opencode"
+    mkdir -p "${HOME}/.config/openai" "${HOME}/.config/gemini" "${HOME}/.config/qwen" "${HOME}/.config/code" "${HOME}/.config/opencode"
 fi
 
 case "${ACTION}" in
     up)
         docker compose -f "${COMPOSE_FILE}" up --build --detach "$@"
+        echo "Container started. Use 'docker exec -it $(basename "$SCRIPT_DIR" | sed 's/toolbox-//') zsh' to access the shell."
         ;;
     down)
         docker compose -f "${COMPOSE_FILE}" down "$@"
+        echo "Container stopped."
         ;;
     *)
         echo "Usage: $0 [up|down] [additional docker compose args]" >&2