feat(toolbox): update toolbox base configuration

- Update ToolboxStack/output/toolbox-base/Dockerfile with latest container settings
- Update ToolboxStack/output/toolbox-base/aqua.yaml with refined tool management

This enhances the base developer environment configuration.

ToolboxStack/output/toolbox-base/Dockerfile

@@ -123,6 +123,7 @@ RUN chown "${USER_ID}:${GROUP_ID}" /tmp/aqua.yaml \
     && su - "${USERNAME}" -c 'AQUA_GLOBAL_CONFIG=~/.config/aquaproj-aqua/aqua.yaml aqua install'
 
 # Install AI CLI tools via npm using mise to ensure Node.js is available
+# These are installed via npm because they're not available through aqua
 RUN mise exec -- npm install -g @just-every/code@0.4.6 @qwen-code/qwen-code@0.1.1 @google/gemini-cli@0.11.0 @openai/codex@0.50.0 opencode-ai@0.15.29
 
 # Install the same AI CLI tools for the toolbox user so they are available in the container runtime