feat(toolbox): update toolbox base configuration

- Update ToolboxStack/output/toolbox-base/Dockerfile with latest container settings
- Update ToolboxStack/output/toolbox-base/aqua.yaml with refined tool management
- Update ToolboxStack/output/toolbox-base/build.sh with improved build process
- Update ToolboxStack/output/toolbox-base/docker-compose.yml with enhanced service definitions

This enhances the base developer environment configuration.

ToolboxStack/output/toolbox-base/aqua.yaml

@@ -3,18 +3,37 @@ registries:
   - type: standard
     ref: v4.431.0
 packages:
+  # GitHub CLI and related tools
   - name: cli/cli@v2.82.1
   - name: jesseduffield/lazygit@v0.55.1
+  
+  # Environment and runtime management
   - name: direnv/direnv@v2.37.1
   - name: dandavison/delta@0.18.2
   - name: ajeetdsouza/zoxide@v0.9.8
+  
+  # Development and build tools
   - name: casey/just@1.43.0
   - name: mikefarah/yq@v4.48.1
   - name: ducaale/xh@v0.25.0
   - name: rs/curlie@v1.8.2
+  
+  # Configuration management
   - name: twpayne/chezmoi@v2.66.1
+  
+  # Shell scripting tools
   - name: mvdan/sh@v3.12.0
   - name: koalaman/shellcheck@v0.11.0
+  - name: mvdan/shfmt@v3.12.0
+  
+  # Container and Docker tools
   - name: hadolint/hadolint@v2.14.0
+  
+  # Python package management
   - name: astral-sh/uv@0.9.6
+  
+  # File watching and automation
   - name: watchexec/watchexec@v2.3.2
+  
+  # Diagram generation
+  - name: yuzutech/kroki-cli@0.10.0