Commit Graph

68 Commits

Author SHA1 Message Date
Alex Lin
a909c6400a duplicate include guards #379
Changed the include guard in PythonPrint.hh
2017-01-24 10:00:40 -06:00
Derek Bankieris
d72a09fef7 Add ability to clear all variables from a DR group
Don't let "sys.exec.out.time" be removed

Refs #350
2016-11-29 13:38:32 -06:00
Derek Bankieris
d859ac8453 Add funciton to remove all data record groups
Refs #350
2016-11-29 11:47:10 -06:00
Derek Bankieris
ac3360e87f Add ability to remove variable from data recording
For the record, I'd like to point out that many of the DataRecordGroup
functions shouldn't be called after init, but we don't prevent anyone
from doing so. Bad Trick!

Refs #350
2016-11-18 08:53:24 -06:00
Michael Vetter
18f0d7e871 Remove trailing whitespaces
Makes it easier to edit the files. So if we press 'end of line' we are
really at the end of line.
2016-11-08 10:25:07 +01:00
Alex Lin
f1cbacd646 ICG exclude of class member variables now defines incorrect memory offsets in io_src #311
This changes back the default behavior to not use offsetof in io_src code.
Added a flag to ICG, -c or --compat15, to globally generate offsetof statements.
Added an ENV variable that can be used to generate offsetof statements by file or directory.
Added in a warning if classes parsed at ICG time are different in size than at runtime.
2016-10-21 13:13:43 -05:00
Derek Bankieris
4f49460a6f Clean up io_* code #330 2016-10-20 14:55:00 -05:00
Dan D. Jordan
9e0f0ba85a Added MonteVar setters where appropriate
Added set_unit mechanism to MonteVar baseclass. Added MonteVar's derived
classes setters where appropriate to facilitate changing inputs after
the instance of MonteVar has already been constructed. Fleshed out
MonteVarFile destructor to remove memory leaks.
2016-10-03 14:57:11 -05:00
Alex Lin
066554b2f7 Merge pull request #297 from ddj116/get_variable
MonteCarlo add_variable duplicate protection and get_variable functionality
2016-08-30 11:00:16 -05:00
Alex Lin
fa4664c4ea Move the loop that waits for scheduled threads to finish out of advance_sim_time #292
2 problems found.  Syncing scheduled threads was not happening at all because the job
was not being rescheduled.  Did not want to deal with changing job call times so I
called the new scheuduled_thread_sync routine from advance_sim_time.  That's where
it started, it'll be fine.

Also found that I was resetting job complete flags too aggressively.  The check to
test if the thread is ready to run was missing.  Added that check back in.
2016-08-30 10:56:18 -05:00
Dan D. Jordan
fdd442ba68 Added duplicate name protection on add_variable and get_variable
mechanism for getting MonteVar * derived types so that those dispersion
settings can be changed once they go out of scope.
2016-08-30 09:48:10 -05:00
Alex Lin
7c57c1d02d Move the loop that waits for scheduled threads to finish out of advance_sim_time #292
Created a new executive job that waits for the scheduled threads to finish.  We
run this right before advancing time.
2016-08-26 09:07:46 -05:00
Alex Lin
0072e7d6f0 Unintended performance issue with integ_loop at end of scheduled job classes #243
Created a new executive job that waits for threads to finish and readies them
for their next frame of execution.  Created a new job class system_thread_sync
after the top of frame jobs and before the input processor is run to sync the
threads.  Along the way cleaned up instrumentation jobs on the threads to fix #290.
2016-08-24 10:55:27 -05:00
Alex Lin
b2293a14ff CheckPointAgent.cpp has a noted memory leak (confirmed) and proposed optimization #232
Changed the vector to use instances of the VarNameElement instances.  Memory leak is gone.
2016-07-28 13:13:19 -05:00
Alex Lin
bc6cb589e3 Monte carlo AttributeError's caused by bad configuration still returns zero in master sim #269
The return code from parsing the monte carlo input was always set to zero and not checked.
Retured the return code from parsing the input. Added an exit if the input was not parsed
correctly.
2016-07-26 13:40:38 -05:00
Alex Lin
f90a76be6b We are redefining HOST_NAME_MAX in MonteCarlo.hh
Removed the redefinition.  Included climits and changed HOST_NAME_MAX to _POSIX_HOST_NAME_MAX
which should be defined on the systems we support.

refs #265
2016-07-06 14:56:05 -05:00
Alex Lin
4ab584ed55 Support using Python 3
Fixed the configure script to allow the user to specify using a python3
interpreter.  Had to change the the way to load the swig generated python modules.
Also had to change code dealing with python strings, oct, long, and
boolean operations.

refs #258
2016-06-28 13:44:21 -05:00
Alex Lin
fcb63e0e06 Output "--" if that was specified in the header file.
Used the mods field in the attributes to indicate of "--" was specified in the header file.  We
still save the units as "1" to keep it compatible with udunits.  When outputting the variable
in data recording or variable server we check to see if the mods field for "--" is set.  We
output "--" if the mods field is set.  Also allowed "--" to persist in data products.

refs #254
2016-06-21 16:12:28 -05:00
Alex Lin
d9f1780939 exec_get_current_version returns string out of scope
Changed Trick::Executive::get_current_version to return a const reference
to the string that holds the version.  This avoids a copy of the string object
and avoids that object going out of scope.  As a string, the debug_command
had the same problem so I fixed that one as well.

refs #252
2016-06-21 16:03:15 -05:00
Alex Lin
fb4601734f Need to include SimTime.hh for ICG and swig processing.
Added the sim time header files to files_to_ICG.hh and sim_services.i so it will be processed.

refs #247
2016-06-15 16:11:09 -05:00
John M. Penn
7ae371c72e Include stddef.h in integrator_c_intf.h. Refs #249 2016-06-10 15:46:10 -05:00
Alex Lin
a95e8e086b Use udunits package for units conversions
Copied the units_conv.c from 15 that includes the new units to master.

Swept through the code removing includes to Unit.hh and UCF.h where they
are no longer needed.  Remade makefile dependencies.

refs #231
2016-05-17 09:01:37 -05:00
Alex Lin
7e218a0472 Use udunits package for units conversions
Change the Variable Server to use udunits.

refs #231
2016-05-16 17:14:50 -05:00
Alex Lin
ee8f07469e Use udunits package for units conversions
Changed the files in our math utilities to use the udunits symbols

refs #231
2016-05-11 16:20:44 -05:00
Alex Lin
26cb44e946 Use udunits package for units conversions
So our unit tests did their job, they pointed to quite a few errors.
Fixed them all on my platform (CentOS 7).

refs #231
2016-05-11 09:01:54 -05:00
Alex Lin
d72aa59fdd Use udunits package for units conversions
Converted data products to use udunits.

refs #231
2016-05-10 14:45:31 -05:00
Alex Lin
6defa99b34 Use udunits package for units conversions
Changed the include for udunits to #include <udunits2.h> to work
on all platforms.  Added the include directory /usr/include/udunits2
for Linux.

refs #231
2016-05-09 10:23:19 -05:00
Alex Lin
4f3ef64002 Use udunits package for units conversions
Changed the handling of how we handle doubles and ints allowing
more mathematical operations like multiplication, division, and
some limited exponentiation.

refs #231
2016-05-09 08:36:43 -05:00
Alex Lin
684f0e6bdc Use udunits package for units conversions
Initial checkin of using udunits for measurement units conversions.  Replaced
our conversion code in ICG and swig code to use udunits.

Also added code to convert unit symbols that we used in Trick that are different
names in udunits.

Added a sim_object that will eventually allow users to specify a custom
set of files to read units information.

refs #231
2016-05-05 14:49:49 -05:00
Alex Lin
8354546160 HDF5 data recording broken
Overrode the write_data routine for HDF5 recording.  The new routine writes
out all buffered values of an individual variable with one or two HDF5 calls.
This is much more efficient than before where we were making an HDF5 call
for a single value.

refs #188
2016-04-25 09:47:13 -05:00
Alex Lin
8c3e322ed1 Variable server restart issues
Added mutexes in the variable server listener thread and each variable server thread.
During checkpoint restart all of these mutexes are locked by the master thread to
stop accepting new connections and stop all read/writing to all variable server clients.
Communication is resumed after the checkpoint has been reloaded.

refs #168
2016-04-19 13:50:30 -05:00
Alex Lin
2cf25b9825 trick comm byteswap functions can't handle sizes above 65536 bytes
Added a pthread specific swap buffer in both tc_read and tc_write.
The buffer is resized if a thread tries to send a buffer larger than
the current swap size.

refs #187
2016-04-19 09:02:57 -05:00
Alex Lin
6c991fae31 Remove catches for non-Trick exceptions
Forgot to add prototypes to turn on/off SIGABRT catching.

refs #220
2016-04-15 16:12:59 -05:00
Alex Lin
03d6105c6c Remove catches for non-Trick exceptions
Removed the catches for std:exceptions and unknown exceptions.  The best way
I found to provide a clue to where the exception comes from is to allow the
handler for unhandled exceptions execute.  This is std::terminate which calls
abort and trips a SIGABRT.  I added a signal handler for SIGABRT which like
SIGSEGV, we can print a stack trace or attach a debugger to the process before
exiting.  The stack trace print is on by default.  By default the signal
handler is on, stack trace is on, debugger is off.

refs #220
2016-04-15 15:01:14 -05:00
Alex Lin
112cc780e0 checkpoint_safestore_set_enabled() has the worst name ever
renamed checkpoint_safestore to checkpoint_safestore_period
renamed checkpoint_safestore_set_enabled to checkpoint_safestore

refs #196
2016-04-15 09:41:28 -05:00
Alex Lin
f63f44d876 Ignore privacy
Changed the storage of offsets from bytes to bits to better handle bitfields.
Added code to track classes that are defined within other classes and are
private/protected.  These classes cannot be used in templates because our
io_src code declares variables outside of the class that would try and use
these private/protected variables.  When a template is found to use a
private/protected class it is skipped.

refs #218
2016-04-13 16:07:15 -05:00
Alex Lin
314e962edf Ignore privacy
Removed the requirement of passing flags throughout ICG indicating if we are
in an inherited class or not.  Removed the init_attr friends throughout
Trick core headers.
2016-04-13 16:07:15 -05:00
Hung Nguyen
0da1ba7653 Merge branch 'master' of https://github.com/nasa/trick 2016-04-04 17:20:58 -05:00
Hung Nguyen
5de28a360c Added the conversion capabilities between Euler angles and quaternions. Refs:#216 2016-04-04 17:07:04 -05:00
Alex Lin
fb7432d096 Add direct STL checkpointing
Modified ICG to save the non-canonical name for STLs.  This is typically more readable
because it is shorter.  Added code to the variable server to filter out requests accessing
STLs, because those accesses will not currently work.

refs #206
2016-04-04 15:07:57 -05:00
Alex Lin
c1eb4e6fc5 Add direct STL checkpointing
The typenames on the Mac need to be converted for strings.  The
templates are genererating the long form of the string type name.  I
wrote a function to catch test the template parameter types and
return std::string.

refs #206
2016-03-31 15:48:19 -05:00
Alex Lin
c8a39f4a44 Add direct STL checkpointing
Removed the previous attempts at STL checkpointing. Removed
the header files and sims.  Also simplified the names of some of
the templates.

refs #206
2016-03-31 14:50:27 -05:00
Alex Lin
06a405ef35 Add direct STL checkpointing
stl::stack code completed.

refs #206
2016-03-31 10:32:13 -05:00
Alex Lin
5368108723 Add direct STL checkpointing
Added queue and priority queue handling.

refs #206
2016-03-31 09:22:45 -05:00
Alex Lin
94febe62f2 Add direct STL checkpointing
Added the templates required for maps, multimaps, and pairs.

refs #206
2016-03-30 16:57:45 -05:00
Alex Lin
c57c10edcd Add direct STL checkpointing
Made adjustments to template default arguments to avoid clang compiler
errors.  Also added an irnore warning during python glue code compilation

refs #206
2016-03-29 09:59:49 -05:00
Alex Lin
46aec08b80 Add direct STL checkpointing
Initial checkin of STL checkpointing.  This checkin only covers the sequential
STLs, vector, list, deque, set, and multiset.  This checkin does include the
changes in Trick header files to include/exclude our STLs properly to make a
restartable checkpoint.

refs #206
2016-03-29 09:26:49 -05:00
Alex Lin
bb6d7f0632 Math with temperature values is not as expected.
For addition and subtraction,  we created a new routine that
only scales second units to the first.  We apply it to all
conversions when adding and subtracting, but it only changes
the temperature results, because that is the only units that
has a bias factor. The comparision conversion routines were not
changed.

refs #202
2016-03-16 16:54:25 -05:00
Alex Lin
26dfb3a000 Move the lock_memory function out of the Executive to RealtimeSync
Moved the lock memory function to the real time sync directory.  It doesn't need
to be part of the RealTimeSync class either so I left the lock/unlock code
in the C language calls for real time functions.

refs #195
2016-03-10 17:05:47 -06:00
John M. Penn
ced68e24b2 Keep track of and free the reference attr created by ref_var. Refs #154 2016-03-08 17:47:09 -06:00