Added a clock reference that to the FrameLog class that defaults
to the GetTimeOfDay clock. This clock has fast access and is
non intrusive to real-time operations using a different clock.
Added a function to set the clock to something else if desired.
Created a new executive job that waits for threads to finish and readies them
for their next frame of execution. Created a new job class system_thread_sync
after the top of frame jobs and before the input processor is run to sync the
threads. Along the way cleaned up instrumentation jobs on the threads to fix#290.
The character string used in the frame log needs to be stored as
a character string. We were using a sprintf with a fixed size buffer.
The easiest change was to use asprintf which allocates a character
string big enough to hold the contents of the print. We need to
save this char string as a char string so it works out.
Setting the frame log size only resized the time line graph, not the normal
frame log groups. Added code to change the size of the normal frame log
groups in addition to the time line.
refs #177
Reorganized. Created a new top level include directory that will hold all of Trick's header files. Moved all of the Trick headers to this directory. Created a libexec directory that holds all of the executables that users don't need to execute directly. Changed all of the executables remaining in bin to start with "trick-". In the sim_services directories changed all source files to find the Trick headers in their new location. Since all of the include files are gone in sim_services, removed the src directories as well, moving all of the source files up a level. Moved the makefiles, docs, man, and other architecture independent files into a top level share directory. Renamed lib_${TRICK_HOST_CPU} to lib64 or lib depending on the platform we're currently on.
refs #63
