docs: adopt per-round files + LLM counterparts; add llm versions for 00-bootstrap and 01-codexhelper; update AGENTS and SeedPrompt

collab/questions/00-bootstrap.llm.md

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+# 00 — Bootstrap — Questions (LLM)
+
+- Remote: origin main; push enabled.
+- Tagging: local time `YYYY-MM-DD-HHMM`.
+- Commits: Conventional Commits.
+- Codex binary: detect `codex` then `codex-cli`; allow `CODEX_BIN` override.
+- Invocation defaults: user currently uses `codex --sandbox workspace-write --full-auto`; make these configurable.
+- Defaults: accept codex-cli defaults for model/token/reasoning unless overridden.
+- Precedence: CLI > env > project > mode > global.
+- Config files: project-contained; no user home dotfiles.
+- Prompts storage: in this repo — global system + mode rules (and optional mode system overlay). Projects elsewhere.
+- Projects: not inside this repo; wrapper used from external project directories.
+- MCP: mix of per-mode defaults + per-project; defer implementation (track in `docs/ROADMAP.md`).
+- Wizards: basic for now (mode: name/desc/defaults/prompts/MCP; project: name/path/prompt/default mode/overrides).
+- CLI UX: prefer subcommands; inside this repo allow only `new-mode`; outside support `new-project` and `run`.
+- Outputs: write to `<project>/runs/<timestamp>/...`.
+- Safety: never overwrite without `--force`; never run `git push` for user projects.
+- Licensing: repo AGPLv3; user artifacts are user-licensed.
+- OS/Deps: Ubuntu/Debian; bash, git, yq.
+- Install: use `CodexHelper` from PATH; provide optional `bin/install.sh` to symlink.
+- Copy prompts: on project scaffold, copy global/mode prompts into `prompts/_mode/` in project (read-only annotated) and compose: global → mode overlay → mode rules → project narrative.