governance: keep repository root clean; remove marker file; implement repo detection via structure heuristic; update tests and system prompts/templates
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@@ -46,3 +46,6 @@ This file is copied by scaffolding into new projects. Edit to suit the project w
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- Plan ahead via Questions → Proposal → Plan to align before coding.
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- Maintain an architecture/module map and clear module boundaries.
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- Implement module-by-module; refactor only when new information requires plan/doc updates.
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## Clean Repository Roots
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- Keep the project root minimal and tidy; prefer organizing assets under subdirectories (docs, templates, prompts, scripts, etc.).
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