Added 2 flags to trick-ICG. "-o" will specify an output directory. Added this
option to the calls to trick-ICG for the Memory Manager tests. Also added
a "-m" option to create the map files ICG creates for sims. The memory manager
tests do not need these maps so we don't include the option. Added the -m option
to the sim makefile and the master makefile so we do create the map when compile
Trick core and sims.
refs #72
Adjusted all of the source code to point to the header files in their new
locations. Adjusted the makefiles for the header locations as well.
Added .gitignore files in the test directories to ignore test object code.
Changed all header file once include variables to follow the same naming
convention and not start with any underscores. Also deleted old
incorrect copyright notices. Also removed $Id: tags from all files.
Fixes#14. Fixes#22.
