* Added tests for MonteCarlo varfile eof line problem
* Remove redundant variables in MonteCarlo varfile test
* Fixed MonteCarlo varfile eof line problem. #459
Adjusted all of the source code to point to the header files in their new
locations. Adjusted the makefiles for the header locations as well.
Added .gitignore files in the test directories to ignore test object code.
Changed all header file once include variables to follow the same naming
convention and not start with any underscores. Also deleted old
incorrect copyright notices. Also removed $Id: tags from all files.
Fixes#14. Fixes#22.