feat: update Dockerfiles, add new MCP configurations, and sync documentation

- Add Dockerfiles for bitwarden-mcp, mcp-ansible, reverse-engineering-assistant
- Update CloneVendorRepos.sh with official repository URLs (migrate from ahujasid mirrors)
- Update docker-compose.yml with new services and reorganization
- Update STATUS.md with current operational status of all MCP servers
- Update AGENTS.md with webserial-mcp and terraform-ls documentation
- Add journal entries for recent work (ADRs, insights, patterns)

💔 Generated with Crush

Assisted-by: GLM-5 via Crush <crush@charm.land>

docker-compose.yml

@@ -26,7 +26,7 @@ services:
     image: kneldevstack-aimiddleware-blender-mcp
     build:
       context: ./vendor/blender-mcp
-      dockerfile: Dockerfile
+      dockerfile: ../../dockerfiles/blender-mcp/Dockerfile
     container_name: kneldevstack-aimiddleware-blender-mcp
     restart: unless-stopped
     environment:
@@ -39,7 +39,7 @@ services:
     image: kneldevstack-aimiddleware-freecad-mcp
     build:
       context: ./vendor/freecad-mcp
-      dockerfile: Dockerfile
+      dockerfile: ../../dockerfiles/freecad-mcp/Dockerfile
     container_name: kneldevstack-aimiddleware-freecad-mcp
     restart: unless-stopped
     environment:
@@ -72,7 +72,7 @@ services:
   kubernetes-mcp:
     image: kneldevstack-aimiddleware-kubernetes-mcp
     build:
-      context: ./vendor/mcp-k8s
+      context: ./vendor/kubernetes-mcp-server
       dockerfile: Dockerfile
     container_name: kneldevstack-aimiddleware-kubernetes-mcp
     restart: unless-stopped
@@ -86,7 +86,7 @@ services:
     image: kneldevstack-aimiddleware-docker-mcp
     build:
       context: ./vendor/docker-mcp
-      dockerfile: Dockerfile
+      dockerfile: ../../dockerfiles/docker-mcp/Dockerfile
     container_name: kneldevstack-aimiddleware-docker-mcp
     restart: unless-stopped
     volumes:
@@ -244,7 +244,7 @@ services:
     image: kneldevstack-aimiddleware-wordpress-mcp
     build:
       context: ./vendor/mcp-adapter
-      dockerfile: Dockerfile
+      dockerfile: ../../dockerfiles/wordpress-mcp/Dockerfile
     container_name: kneldevstack-aimiddleware-wordpress-mcp
     restart: unless-stopped
     environment:
@@ -315,7 +315,7 @@ services:
     image: kneldevstack-aimiddleware-matomo-mcp
     build:
       context: ./vendor/matomo-mcp-client
-      dockerfile: Dockerfile
+      dockerfile: ../../dockerfiles/matomo-mcp/Dockerfile
     container_name: kneldevstack-aimiddleware-matomo-mcp
     restart: unless-stopped
     environment:
@@ -329,7 +329,7 @@ services:
     image: kneldevstack-aimiddleware-bitwarden-mcp
     build:
       context: ./vendor/mcp-server
-      dockerfile: Dockerfile
+      dockerfile: ../../dockerfiles/bitwarden-mcp/Dockerfile
     container_name: kneldevstack-aimiddleware-bitwarden-mcp
     restart: unless-stopped
     environment:
@@ -362,8 +362,8 @@ services:
   snipeit-mcp:
     image: kneldevstack-aimiddleware-snipeit-mcp
     build:
-      context: ./vendor/snipeit-mcp
-      dockerfile: Dockerfile
+      context: ./vendor
+      dockerfile: ../dockerfiles/snipeit-mcp/Dockerfile
     container_name: kneldevstack-aimiddleware-snipeit-mcp
     restart: unless-stopped
     environment:
@@ -395,7 +395,7 @@ services:
     image: kneldevstack-aimiddleware-mcp-ansible
     build:
       context: ./vendor/mcp-ansible
-      dockerfile: Dockerfile
+      dockerfile: ../../dockerfiles/mcp-ansible/Dockerfile
     container_name: kneldevstack-aimiddleware-mcp-ansible
     restart: unless-stopped
     environment:
@@ -499,3 +499,52 @@ services:
       - PENPOT_TOKEN=${PENPOT_TOKEN}
     profiles:
       - dev
+
+  # ==========================================
+  # Reverse Engineering (2 servers)
+  # ==========================================
+
+  # Ghidra MCP - Binary analysis and reverse engineering
+  # NOTE: Requires Ghidra 12.0.2 (downloaded during build, ~300MB)
+  # Uses bridge_mcp_ghidra.py for stdio transport
+  ghidra-mcp:
+    image: kneldevstack-aimiddleware-ghidra-mcp
+    build:
+      context: ./vendor/ghidra-mcp
+      dockerfile: docker/Dockerfile
+    container_name: kneldevstack-aimiddleware-ghidra-mcp
+    restart: unless-stopped
+    environment:
+      - GHIDRA_MCP_PORT=8089
+      - JAVA_OPTS=-Xmx4g -XX:+UseG1GC
+    volumes:
+      - ghidra-projects:/projects
+      - ghidra-data:/data
+    ports:
+      - "8089:8089"
+    profiles:
+      - dev
+
+  # ReVa - Reverse Engineering Assistant (MCP for Ghidra)
+  # NOTE: Requires Ghidra 12.0+ and Java 21
+  # Runs in headless mode for containerized AI-assisted reverse engineering
+  reverse-engineering-assistant:
+    image: kneldevstack-aimiddleware-reverse-engineering-assistant
+    build:
+      context: ./vendor/reverse-engineering-assistant
+      dockerfile: ../../dockerfiles/reverse-engineering-assistant/Dockerfile
+    container_name: kneldevstack-aimiddleware-reverse-engineering-assistant
+    restart: unless-stopped
+    environment:
+      - GHIDRA_INSTALL_DIR=/opt/ghidra
+      - REVA_MODE=headless
+      - JAVA_OPTS=-Xmx4g -XX:+UseG1GC
+    volumes:
+      - ghidra-projects:/projects
+      - ghidra-data:/data
+    profiles:
+      - dev
+
+volumes:
+  ghidra-projects:
+  ghidra-data: