feat: update Dockerfiles, add new MCP configurations, and sync documentation

- Add Dockerfiles for bitwarden-mcp, mcp-ansible, reverse-engineering-assistant
- Update CloneVendorRepos.sh with official repository URLs (migrate from ahujasid mirrors)
- Update docker-compose.yml with new services and reorganization
- Update STATUS.md with current operational status of all MCP servers
- Update AGENTS.md with webserial-mcp and terraform-ls documentation
- Add journal entries for recent work (ADRs, insights, patterns)

💔 Generated with Crush

Assisted-by: GLM-5 via Crush <crush@charm.land>

STATUS.md

@@ -4,6 +4,39 @@ Tracking the setup and validation of MCP/LSP servers via Docker Compose.
 
 Last validated: 2026-02-17
 
+## Repository URL Updates (2026-02-17)
+
+CloneVendorRepos.sh has been updated to use official repository sources instead of ahujasid/* mirrors.
+All 30 requested MCP/LSP repositories are now configured with correct URLs:
+
+**Fixed Repository URLs (20 changes):**
+- freecad-mcp: ahujasid → neka-nat
+- gimp-mcp: ahujasid → maorcc
+- docker-language-server: rcjsuen → docker
+- drawio-mcp-server: ahujasid → lgazo
+- matomo-mcp-client: ahujasid → openmost
+- imap-mcp: ahujasid → non-dirty
+- mcp-redmine: ahujasid → runekaagaard
+- ghost-mcp: ahujasid → MFYDev
+- discourse-mcp: ahujasid → discourse
+- mcp-cloudron: ahujasid → serenichron
+- postizz-MCP: ahujasid → oculairmedia
+- snipeit-mcp: ahujasid → Wil-Collier
+- nextcloud-mcp-server: ahujasid → cbcoutinho
+- docker-mcp: ahujasid → QuantGeekDev
+- kubernetes-mcp-server: ahujasid → containers
+- ProxmoxMCP: ahujasid → canvrno
+- terraform-mcp-server: ahujasid → hashicorp
+- mcp-ansible: ahujasid → bsahane
+- mcp-adapter: ahujasid → WordPress
+- audiobook-mcp-server: ahujasid → joelmale
+
+**Added Repositories (4 new):**
+- reverse-engineering-assistant (cyberkaida)
+- ghidra-mcp (bethington)
+- webserial-mcp (DG1001)
+- terraform-ls (hashicorp)
+
 ## Validation Summary
 
 **Working MCP Servers:**
@@ -31,8 +64,8 @@ Last validated: 2026-02-17
 **Host-Only MCP Servers:**
 - ✗ kicad-mcp: Requires KiCAD installed on host (pcbnew Python module unavailable in container)
 
-**HTTP-based MCP Servers:**
-- None
+**HTTP-based REST API Servers:**
+- ✓ ghidra-mcp: Working (v1.9.4-headless) - 91 REST endpoints for binary analysis - NOT MCP protocol (uses HTTP REST)
 
 **Pending Build:**
 - All other MCP servers pending build
@@ -51,6 +84,8 @@ Last validated: 2026-02-17
 - docker-language-server: Built (v0.0.0) - configured in crush.json via wrapper script
 - ✓ kubernetes-mcp: Built (silenceper/mcp-k8s) - stdio-based, requires kubeconfig mount
 - ✓ webserial-mcp: Built (Python/Flask) - stdio-based, requires bridge server + browser + ESP32 hardware
+- ✓ terraform-ls: Built (HashiCorp binary) - stdio-based, LSP for Terraform
+- ✓ reverse-engineering-assistant: Pending build - Ghidra extension for AI-assisted reverse engineering
 
 **Builds in Progress:**
 - None
@@ -58,21 +93,19 @@ Last validated: 2026-02-17
 **Build Failures:**
 - None
 
-**Missing Vendor Repositories:**
-- ✗ matomo-mcp: Cannot build - vendor repo `https://github.com/ahujasid/matomo-mcp-client.git` does not exist (404)
-- ✗ discourse-mcp: Cannot build - vendor repo `https://github.com/ahujasid/discourse-mcp.git` exists but is empty (no commits)
-
-**Empty Vendor Repositories (ahujasid):**
-All the following ahujasid repositories exist but contain no code (empty repos with only .git folder):
-- ✗ kubernetes-mcp-server: Empty repo - `https://github.com/ahujasid/kubernetes-mcp-server.git`
-- ✗ proxmox-mcp: Empty repo - `https://github.com/ahujasid/ProxmoxMCP.git`
-- ✗ terraform-mcp: Empty repo - `https://github.com/ahujasid/terraform-mcp-server.git`
-- ✗ nextcloud-mcp: Empty repo - `https://github.com/ahujasid/nextcloud-mcp-server.git`
-- ✗ snipeit-mcp: Empty repo - `https://github.com/ahujasid/snipeit-mcp.git`
-- ✗ mcp-redmine: Empty repo - `https://github.com/ahujasid/mcp-redmine.git`
-- ✗ mcp-ansible: Empty repo - `https://github.com/ahujasid/mcp-ansible.git`
-- ✗ penpot-mcp: Empty repo - `https://github.com/ahujasid/penpot-mcp.git`
-- ✗ postizz-mcp: Empty repo - `https://github.com/ahujasid/postizz-MCP.git`
+**Vendor Repositories - Re-Clone Required:**
+The following services need vendor directories re-cloned with correct repository URLs:
+- discourse-mcp: Now uses official discourse/discourse-mcp
+- matomo-mcp: Now uses official openmost/matomo-mcp-client
+- proxmox-mcp: Now uses official canvrno/ProxmoxMCP
+- terraform-mcp: Now uses official hashicorp/terraform-mcp-server
+- nextcloud-mcp: Now uses official cbcoutinho/nextcloud-mcp-server
+- snipeit-mcp: Now uses official Wil-Collier/snipeit-mcp
+- mcp-redmine: Now uses official runekaagaard/mcp-redmine
+- mcp-ansible: Now uses official bsahane/mcp-ansible
+- penpot-mcp: Still uses ahujasid/penpot-mcp (not in user's requested list)
+- postizz-mcp: Now uses official oculairmedia/postizz-MCP
+- kubernetes-mcp: Now uses official containers/kubernetes-mcp-server
 
 **LSP Servers:**
 - ✓ bash-language-server: Working (v5.6.0) - stdio-based, configured in crush.json
@@ -98,36 +131,50 @@ All the following ahujasid repositories exist but contain no code (empty repos w
 | gimp-mcp | Built | Container built from Python source (418MB). Uses uv package manager. Fixed Dockerfile to use python -m instead of uvx. MCP stdio-based, requires GIMP with server running. Version 1.10.1. |
 | imap-mcp | Built | Container built from Python source (317MB). Uses uv package manager. MCP stdio-based, requires working IMAP server (crashes on startup if IMAP unreachable). Version 0.1.0. |
 | kicad-mcp | Host-Only | Container builds successfully (463MB) but cannot run containerized. Requires KiCAD's pcbnew Python module which is only available with a KiCAD installation on the host. Cannot be pip-installed. Use on host machine only. |
-| matomo-mcp | Blocked | Cannot build - vendor repository does not exist. CloneVendorRepos.sh references https://github.com/ahujasid/matomo-mcp-client.git which returns 404. |
-| discourse-mcp | Blocked | Cannot build - vendor repository exists but is empty. CloneVendorRepos.sh references https://github.com/ahujasid/discourse-mcp.git which has no commits. |
+| matomo-mcp | Re-Clone | Now uses official openmost/matomo-mcp-client. Re-clone vendor directory and rebuild. |
+| discourse-mcp | Re-Clone | Now uses official discourse/discourse-mcp. Re-clone vendor directory and rebuild. |
 | kubernetes-mcp | Built | Container built from Go source (67MB). Uses silenceper/mcp-k8s alternative repo. Multi-stage build with golang:1.24.1 and alpine:3.18.4. MCP stdio-based, requires kubeconfig mounted at /root/.kube/config. Supports K8s resources and Helm operations. |
 | webserial-mcp | Built | Container built from Python source. Uses Flask-SocketIO for WebSocket bridge. MCP stdio-based, requires esp32_bridge_server.py running on host at ws://host.docker.internal:3000 + browser with WebSerial access + ESP32 hardware. Tools: upload_code, execute_command, read_console, reset_device, list_files. |
-| proxmox-mcp | Blocked | Cannot build - vendor repository https://github.com/ahujasid/ProxmoxMCP.git is empty (no code). |
-| terraform-mcp | Blocked | Cannot build - vendor repository https://github.com/ahujasid/terraform-mcp-server.git is empty (no code). |
-| nextcloud-mcp | Blocked | Cannot build - vendor repository https://github.com/ahujasid/nextcloud-mcp-server.git is empty (no code). |
-| snipeit-mcp | Blocked | Cannot build - vendor repository https://github.com/ahujasid/snipeit-mcp.git is empty (no code). |
-| mcp-redmine | Blocked | Cannot build - vendor repository https://github.com/ahujasid/mcp-redmine.git is empty (no code). |
-| mcp-ansible | Blocked | Cannot build - vendor repository https://github.com/ahujasid/mcp-ansible.git is empty (no code). |
-| penpot-mcp | Blocked | Cannot build - vendor repository https://github.com/ahujasid/penpot-mcp.git is empty (no code). |
-| postizz-mcp | Blocked | Cannot build - vendor repository https://github.com/ahujasid/postizz-MCP.git is empty (no code). |
+| proxmox-mcp | Re-Clone | Now uses official canvrno/ProxmoxMCP. Re-clone vendor directory and rebuild. |
+| terraform-mcp | Re-Clone | Now uses official hashicorp/terraform-mcp-server. Re-clone vendor directory and rebuild. |
+| nextcloud-mcp | Re-Clone | Now uses official cbcoutinho/nextcloud-mcp-server. Re-clone vendor directory and rebuild. |
+| snipeit-mcp | Re-Clone | Now uses official Wil-Collier/snipeit-mcp. Re-clone vendor directory and rebuild. |
+| mcp-redmine | Re-Clone | Now uses official runekaagaard/mcp-redmine. Re-clone vendor directory and rebuild. |
+| mcp-ansible | Re-Clone | Now uses official bsahane/mcp-ansible. Re-clone vendor directory and rebuild. |
+| penpot-mcp | Re-Clone | Still uses ahujasid/penpot-mcp (not in user's requested list). May need alternative source. |
+| postizz-mcp | Re-Clone | Now uses official oculairmedia/postizz-MCP. Re-clone vendor directory and rebuild. |
 | bash-language-server | Built | Container built using prebuilt npm package (190MB). LSP configured in crush.json via wrapper script. Version 5.6.0. |
 | docker-language-server | Built | Container built from Go source (49.2MB). LSP configured in crush.json via wrapper script. Version 0.0.0. |
 | marksman | Built | Container built from prebuilt binary (144MB). LSP configured in crush.json via wrapper script. Version 2025-12-13. |
 | terraform-ls | Built | Container built from HashiCorp binary (64MB). LSP configured in crush.json via wrapper script. Version 0.38.4. |
+| ghidra-mcp | Built | Container built from Java source (1.2GB). Multi-stage build with Ghidra 12.0.3. REST API server (NOT MCP protocol) - 91 endpoints for binary analysis. Fixed network binding (0.0.0.0) and JAR assembly. Endpoints: /check_connection, /get_version, /list_functions, /decompile_function, etc. Requires binary loaded via /open_binary endpoint. Version 1.9.4-headless. |
+| reverse-engineering-assistant | New | Ghidra extension for AI-assisted reverse engineering (ReVa). Dockerfile created, pending build/test. Runs in headless mode with Java 21. |
 | wordpress-mcp | Blocked | Cannot build as standalone MCP server. The WordPress MCP Adapter is a PHP plugin that must be installed within a running WordPress instance. Requires WordPress + Abilities API plugin + MCP Adapter plugin. Uses WP-CLI for STDIO transport. Not suitable for containerized standalone deployment. |
 
 ## Known Issues
 
-### Empty ahujasid Repositories (2026-02-17)
-Investigation revealed that most ahujasid vendor repositories are empty (contain only .git folder, no code):
-- kubernetes-mcp-server, ProxmoxMCP, terraform-mcp-server, nextcloud-mcp-server, snipeit-mcp, mcp-redmine, mcp-ansible, penpot-mcp, postizz-MCP
-- discourse-mcp (previously documented) - also empty
-- matomo-mcp-client - repo doesn't exist (404)
+### Repository URL Migration (2026-02-17)
+CloneVendorRepos.sh has been updated with official repository URLs.
+**Action Required:** Delete existing vendor directories and re-run CloneVendorRepos.sh to get correct source code.
 
-These repos cannot be used to build MCP containers. Alternative sources or official repos should be identified.
+```bash
+rm -rf vendor/*
+./scripts/CloneVendorRepos.sh
+```
 
-### Alternative Repositories Available
-- kubernetes-mcp: Use silenceper/mcp-k8s instead (has content and Dockerfile)
+### Dockerfiles Requiring Updates
+Several Dockerfiles may need updates to work with the new official repositories:
+- freecad-mcp: Verify Dockerfile works with neka-nat/freecad-mcp
+- gimp-mcp: Verify Dockerfile works with maorcc/gimp-mcp
+- discourse-mcp: May need new Dockerfile for official discourse/discourse-mcp
+- ghost-mcp: Verify Dockerfile works with MFYDev/ghost-mcp
+- All other updated repositories should be verified after re-cloning
+
+### reverse-engineering-assistant (New)
+Dockerfile created but requires testing:
+- Needs Ghidra 12.0+ and Java 21
+- Runs in headless mode
+- May need adjustments based on actual build process
 
 ### WordPress MCP Configuration (2026-02-17)
 The WordPress MCP Adapter (`@wordpress/mcp-adapter`) is NOT a standalone MCP server: