Functioning build directory on Linux. Everything is going into the build directory.
All files for all steps use the full path. this change removes the need for us to
call depend_objs to fix makefile dependencies. Changed the makefile rules to use
more pattern rules reducing the size of make_makefile.pm and the makefile too.
Changed the output of make to show short commands for each compile line. Setting
the variable TRICK_VERBOSE_BUILD in the environement, command line, or in S_overrides.mk
will change the output to the full printout.
refs #80
Adjusted all of the source code to point to the header files in their new
locations. Adjusted the makefiles for the header locations as well.
Added .gitignore files in the test directories to ignore test object code.
Changed the way JITEvents are created and handled. Instead of taking a function pointer directly we save a name of a function to the JITEvent class. The class will dynamically look up a function that matches the name both during event creation and during checkpoint restart.
Fixes#53
