Replaced our handmade configure script with one created with autoconf. Added a config_user.mk.in file that is populated with the output of a configure. Some platform specific makefile assignments that never change are included in the files config_Darwin.mk and config_Linux.mk.
refs #13
Reorganized. Created a new top level include directory that will hold all of Trick's header files. Moved all of the Trick headers to this directory. Created a libexec directory that holds all of the executables that users don't need to execute directly. Changed all of the executables remaining in bin to start with "trick-". In the sim_services directories changed all source files to find the Trick headers in their new location. Since all of the include files are gone in sim_services, removed the src directories as well, moving all of the source files up a level. Moved the makefiles, docs, man, and other architecture independent files into a top level share directory. Renamed lib_${TRICK_HOST_CPU} to lib64 or lib depending on the platform we're currently on.
refs #63
Missed a couple of files where message_publish is in an ifdef __APPLE__
section. But I decided to put message_type.h back in message_proto.h
because taking it out would affect a lot of user code.
Adds to #14.
