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The storage dialog is folded when activating the runtime view (e.g., by clicking on the Genode Logo). This should happen immediately as response of the mouse click.
This directory is a source-code repository containing Genode-specific services and applications. In contrast to the components that come with the 'os' repository, programs contained in 'gems' are able to leverage the functionalities provided by higher-level repositories such as 'libports'. To use the 'gems' repository, make sure to also add those repositories to your build configuraion.