When the system class path contains more than one .jar, it is quite
concievable that, say, 'META-INF/MANIFEST.MF' can be found in multiple
class path elements.
This commit teaches the working horse of class path inspection, the
Finder class, how to continue the search at a given state.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
This implementation is intentionally simple. If and when the need arises,
we can always implement a more performant version.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
This implementation is intentionally simple. If and when the need arises,
we can always implement a more performant version.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
If need be, this functionality can be sped up by implementing a
descending iterator on the tree without copying it into an ArrayList.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
This change reuses the existing insertion sort (which was previously what
Arrays.sort() executed) in a full intro sort pipeline.
The implementation is based on the Musser paper on intro sort (Musser,
David R. "Introspective sorting and selection algorithms." Softw., Pract.
Exper. 27.8 (1997): 983-993.) and Wikipedia's current description of the
heap sort: http://en.wikipedia.org/wiki/Heapsort.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
This is a very dumb implementation that wastes space and time by
constructing a full-blown ArrayList as backend. However, it is
better to have a dumb implementation than none at all, and we can
always do something about the performance when, and if, that should
become necessary.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
When creating an object array with more than two dimensions, the
component type was erroneously set to the base type, not the array
type of one less dimension.
This prevented Collection<Class[]>#toArray(Class[][]) from working
properly.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
We do not really support regular expressions yet, but we do support
trivial patterns including ones with escaped characters. Let's make sure
that that works as advertised.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
In the previous commit, we did not support characters in regular
expressions specified via \0..., \x... or \u... yet. This is a bit more
involved, therefore support for them is added in its own commit.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
When a regular expression contains escaped characters such as the
backslash, it is actually still a literal string. So let's support the
trivially-escaped characters, too, that are documented in
http://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
This implementation is by no means intended to be complete, just enough to
support running http://http://loci.wisc.edu/software/bio-formats's
loci.formats.tools.ImageConverter tool.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Avian's ByteBuffer implementation is actually fixed to big endian. So
let's throw an exception if the user tries to change that.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
So far, we only allowed opening in read-only mode. Now, we also support
read/write mode in addition.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
This implements all the methods required by the DataOutput interface; to
run Bio-Formats' bfconvert tool, actually only the write() and writeByte()
methods would be required.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
