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Add a .gitattributes file to make sure files for use on linux have linux style line-endings.
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.gitattributes
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6
.gitattributes
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# Set all files to use line feed endings (since we can't match only ones without an extension)
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* eol=lf
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# And then reset all the files with extensions back to default
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*.* -eol
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*.sh text eol=lf
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