issue_863: Successfully moved all the dependencies to toml file and currently replacing dependencies listed in the build.gradle file with the ones referenced in the toml file

HIRS_AttestationCA/build.gradle

@@ -27,15 +27,16 @@ dependencies {
     implementation project(':HIRS_Utils')
     implementation project(':HIRS_Structs')
 
-    implementation 'org.springframework.boot:spring-boot-starter-data-jpa:3.0.1'
+
-    implementation 'com.github.darrachequesne:spring-data-jpa-datatables:6.0.1'
+    implementation libs.spring.data.jpa.datatables
-    implementation 'org.springframework.retry:spring-retry:2.0.0'
+    implementation libs.spring.boot.starter.data.jpa
-    implementation libs.springdatajpa
+    implementation libs.spring.retry
+    implementation libs.spring.boot.starter.web
 
     implementation libs.bouncycastle
     implementation libs.commons.codec
     implementation libs.commons.lang3
-    implementation libs.jakarta.api
+    implementation libs.jakarta.persistence.api
     implementation libs.jakarta.xml
     implementation libs.hibernate.core
     implementation libs.pci
@@ -44,18 +45,18 @@ dependencies {
     implementation libs.jackson.databind
     implementation libs.minimal.json
     implementation libs.protobuf.java
-    implementation 'org.apache.logging.log4j:log4j-core:2.19.0'
+    implementation libs.log4j.api
-    implementation 'org.apache.logging.log4j:log4j-api:2.19.0'
+    implementation libs.log4j.core
 
-    testImplementation 'org.apache.directory.studio:org.apache.commons.io:2.4'
+    testImplementation libs.apache.commons.io
-    testImplementation 'org.hamcrest:hamcrest:2.2'
+    testImplementation libs.hamcrest
-    testImplementation 'org.junit.jupiter:junit-jupiter:5.9.3'
+    testImplementation libs.junit.jupiter
-    testImplementation 'org.junit.platform:junit-platform-launcher:1.9.3'
+    testImplementation libs.junit.platform.launcher
-    testImplementation 'org.mockito:mockito-core:4.2.0'
+    testImplementation libs.mockito.core
-    testImplementation 'org.springframework:spring-test:6.0.8'
+    testImplementation libs.spring.test
 
-    compileOnly "com.github.spotbugs:spotbugs-annotations:${spotBugAnnotationVersion}"
+    compileOnly libs.spotbugs.annotations
-    annotationProcessor "com.github.spotbugs:spotbugs-annotations:${spotBugAnnotationVersion}"
+    annotationProcessor libs.spotbugs.annotations
 
     // spring management
     compileOnly libs.lombok

HIRS_AttestationCAPortal/build.gradle

@@ -47,26 +47,28 @@ dependencies {
     implementation libs.bouncycastle
     implementation libs.guava
     implementation libs.jakarta.servlet
-    implementation libs.jakarta.api
+    implementation libs.jakarta.persistence.api
     implementation libs.jakarta.xml
 
-    implementation 'org.springframework.boot:spring-boot-starter-web'
+    //implementation libs.
-    implementation 'org.springframework.boot:spring-boot-starter-validation'
-    implementation 'org.springframework.boot:spring-boot-starter-data-jpa'
-    implementation 'org.springframework.boot:spring-boot-starter-log4j2'
-    implementation 'org.apache.logging.log4j:log4j-spring-boot'
-    implementation 'org.projectlombok:lombok'
-    implementation 'commons-fileupload:commons-fileupload:1.5'
-    implementation 'org.apache.tomcat.embed:tomcat-embed-jasper:10.1.5'
 
-    compileOnly 'org.projectlombok:lombok'
+    implementation libs.spring.boot.starter.web
-    implementation 'org.mariadb.jdbc:mariadb-java-client:3.1.4'
+    implementation libs.spring.boot.starter.validation
-    annotationProcessor 'org.projectlombok:lombok'
+    implementation libs.spring.boot.starter.data.jpa
-    providedRuntime 'org.springframework.boot:spring-boot-starter-tomcat'
+    implementation libs.spring.boot.starter.log4j2
+    implementation libs.log4j.spring.boot
+    implementation libs.lombok
+    implementation libs.commons.fileupload
+    implementation libs.tomcat.embed.jasper
 
-    testImplementation 'org.springframework.boot:spring-boot-starter-test'
+    compileOnly libs.lombok
-    testImplementation 'org.junit.jupiter:junit-jupiter:5.9.3'
+    implementation libs.mariadb.java.client
-    testImplementation 'org.hsqldb:hsqldb'
+    annotationProcessor libs.lombok
+    providedRuntime libs.spring.boot.starter.tomcat
+
+    testImplementation libs.spring.boot.starter.test
+    testImplementation libs.junit.jupiter
+    testImplementation libs.hsqldb
 }
 
 checkstyle {

HIRS_Structs/build.gradle

@@ -16,12 +16,12 @@ repositories {
 }
 
 dependencies {
-    implementation 'org.apache.commons:commons-lang3:3.13.0'
+    implementation libs.commons.lang3
 
 //    testCompile libs.mockito
-    testImplementation 'org.junit.jupiter:junit-jupiter:5.9.3'
+    testImplementation libs.junit.jupiter
-    testImplementation 'org.junit.platform:junit-platform-launcher:1.9.3'
+    testImplementation libs.junit.platform.launcher
-    testImplementation 'org.hamcrest:hamcrest:2.2'
+    testImplementation libs.hamcrest
 }
 
 test {

HIRS_Utils/build.gradle

@@ -31,7 +31,7 @@ dependencies {
     implementation libs.lombok
     implementation libs.jackson.core
     implementation libs.jackson.databind
-    implementation libs.jakarta.api
+    implementation libs.jakarta.persistence.api
     implementation libs.jakarta.xml
     implementation libs.guava
     implementation libs.commons.codec
@@ -40,15 +40,15 @@ dependencies {
     implementation libs.minimal.json
     implementation libs.pci
 
-    implementation 'org.apache.logging.log4j:log4j-core:2.19.0'
+    implementation libs.log4j.core
-    implementation 'org.apache.logging.log4j:log4j-api:2.19.0'
+    implementation libs.log4j.api
-    implementation 'org.glassfish.jaxb:jaxb-runtime:4.0.1'
+    implementation libs.glassfish.jaxb.runtime
-    implementation 'org.slf4j:slf4j-simple:1.7.30'
+    implementation libs.slf4j.simple
 
-    testImplementation 'org.junit.jupiter:junit-jupiter:5.9.3'
+    testImplementation libs.junit.jupiter
-    testImplementation 'org.junit.platform:junit-platform-launcher:1.9.3'
+    testImplementation libs.junit.platform.launcher
-    testImplementation 'org.hamcrest:hamcrest:2.2'
+    testImplementation libs.hamcrest
-    testImplementation 'org.mockito:mockito-core:4.2.0'
+    testImplementation libs.mockito.core
     testImplementation project(path: ':HIRS_AttestationCA')
 
     compileOnly libs.lombok

gradle.properties

@@ -3,5 +3,3 @@ includeGroups=
 org.gradle.daemon=true
 org.gradle.jvmargs=-Xms256m -Xmx1024m
 org.gradle.caching=true
-#dependency versions
-spotBugAnnotationVersion=4.8.6

gradle/versions.toml

@@ -0,0 +1,87 @@
+[versions]
+bouncyCastleVersion = "1.77"
+commonsCodecVersion = "1.15"
+commonsFileuploadVersion = "1.5"
+commonsIoVersion = "2.11.0"
+commonsLang3Version = "3.13.0"
+gsonVersion = "2.10.1"
+glassfishJsonVersion = "1.1.4"
+glassfishJaxbRuntimeVersion = "2.3.1"
+guavaVersion = "31.1-jre"
+hibernateCoreVersion = "6.1.7.Final"
+jacksonVersion = "2.14.2"
+jakartaApiVersion = "3.1.0"
+jakartaServletVersion = "3.0.0"
+jakartaXmlVersion = "4.0.0"
+jcommanderVersion = "1.83"
+log4jVersion = "2.19.0"
+lombokVersion = "1.18.26"
+mariadbVersion = "3.1.4"
+minimalJsonVersion = "0.9.5"
+ospackageVersion = "11.2.0"
+pciVersion = "0.3"
+protobufJavaVersion = "3.24.1"
+springBootVersion = "3.0.1"
+springDataJpaDatatablesVersion = "6.0.1"
+springRetryVersion = "2.0.0"
+testngVersion = "7.4.0"
+tomcatVersion = "10.1.5"
+
+#test dependencies versions
+apacheCommonsVersion = "2.4"
+hamcrestVersion = "2.2"
+hsqldbVersion = "2.7.2"
+junitJupiterVersion = "5.9.3"
+junitPlatformVersion = "1.9.3"
+mockitoVersion = "4.2.0"
+slf4jVersion = "1.7.30"
+springTestVersion = "6.0.8"
+spotBugAnnotationVersion = "4.8.6"
+
+[libraries]
+bouncycastle = { module = "org.bouncycastle:bcmail-jdk18on", version.ref = "bouncyCastleVersion" }
+commons-codec = { module = "commons-codec:commons-codec", version.ref = "commonsCodecVersion" }
+commons-fileupload = { module = "commons-fileupload:commons-fileupload", version.ref = "commonsFileuploadVersion" }
+commons-io = { module = "commons-io:commons-io", version.ref = "commonsIoVersion" }
+commons-lang3 = { module = "org.apache.commons:commons-lang3", version.ref = "commonsLang3Version" }
+gson = { module = "com.google.code.gson:gson", version.ref = "gsonVersion" }
+glassfish-javax-json = { module = "org.glassfish:javax.json", version.ref = "glassfishJsonVersion" }
+glassfish-jaxb-runtime = { module = "org.glassfish.jaxb:jaxb-runtime", version.ref = "glassfishJaxbRuntimeVersion" }
+guava = { module = "com.google.guava:guava", version.ref = "guavaVersion" }
+hibernate-core = { module = "org.hibernate:hibernate-core", version.ref = "hibernateCoreVersion" }
+jackson-core = { module = "com.fasterxml.jackson.core:jackson-core", version.ref = "jacksonVersion" }
+jackson-databind = { module = "com.fasterxml.jackson.core:jackson-databind", version.ref = "jacksonVersion" }
+jakarta-persistence-api = { module = "jakarta.persistence:jakarta.persistence-api", version.ref = "jakartaApiVersion" }
+jakarta-servlet = { module = "org.glassfish.web:jakarta.servlet.jsp.jstl", version.ref = "jakartaServletVersion" }
+jakarta-xml = { module = "jakarta.xml.bind:jakarta.xml.bind-api", version.ref = "jakartaXmlVersion" }
+jcommander = { module = "org.jcommander:jcommander", version.ref = "jcommanderVersion" }
+log4j-api = { module = "org.apache.logging.log4j:log4j-api", version.ref = "log4jVersion" }
+log4j-core = { module = "org.apache.logging.log4j:log4j-core", version.ref = "log4jVersion" }
+log4j-spring-boot = { module = "org.apache.logging.log4j:log4j-spring-boot", version.ref = "log4jVersion" }
+lombok = { module = "org.projectlombok:lombok", version.ref = "lombokVersion" }
+mariadb-java-client = { module = "org.mariadb.jdbc:mariadb-java-client", version.ref = "mariadbVersion" }
+minimal-json = { module = "com.eclipsesource.minimal-json:minimal-json", version.ref = "minimalJsonVersion" }
+ospackage = { module = "com.netflix.nebula:gradle-ospackage-plugin", version.ref = "ospackageVersion" }
+pci = { module = "com.github.marandus:pci-ids", version.ref = "pciVersion" }
+protobuf-java = { module = "com.google.protobuf:protobuf-java", version.ref = "protobufJavaVersion" }
+slf4j-simple = { module = "org.slf4j:slf4j-simple", version.ref = "slf4jVersion" }
+spring-boot-starter-data-jpa = { module = "org.springframework.boot:spring-boot-starter-data-jpa", version.ref = "springBootVersion" }
+spring-boot-starter-log4j2 = { module = "org.springframework.boot:spring-boot-starter-log4j2", version.ref = "springBootVersion" }
+spring-boot-starter-tomcat = { module = "org.springframework.boot:spring-boot-starter-tomcat", version.ref = "springBootVersion" }
+spring-boot-starter-validation = { module = "org.springframework.boot:spring-boot-starter-validation", version.ref = "springBootVersion" }
+spring-boot-starter-web = { module = "org.springframework.boot:spring-boot-starter-web", version.ref = "springBootVersion" }
+spring-data-jpa-datatables = { module = "com.github.darrachequesne:spring-data-jpa-datatables", version.ref = "springDataJpaDatatablesVersion" }
+spring-retry = { module = "org.springframework.retry:spring-retry", version.ref = "springRetryVersion" }
+tomcat-embed-jasper = { module = "org.apache.tomcat.embed:tomcat-embed-jasper", version.ref = "tomcatVersion" }
+testng = { module = "org.testng:testng", version.ref = "testngVersion" }
+
+# test dependencies
+apache-commons-io = { module = "org.apache.directory.studio:org.apache.commons.io", version.ref = "apacheCommonsVersion" }
+hamcrest = { module = "org.hamcrest:hamcrest", version.ref = "hamcrestVersion" }
+hsqldb = { module = "org.hsqldb:hsqldb", version.ref = "hsqldbVersion" }
+junit-jupiter = { module = "org.junit.jupiter:junit-jupiter", version.ref = "junitJupiterVersion" }
+junit-platform-launcher = { module = "org.junit.platform:junit-platform-launcher", version.ref = "junitPlatformVersion" }
+mockito-core = { module = "org.mockito:mockito-core", version.ref = "mockitoVersion" }
+spring-test = { module = "org.springframework:spring-test", version.ref = "springTestVersion" }
+spring-boot-starter-test = { module = "org.springframework.boot:spring-boot-starter-test", version.ref = "springBootVersion" }
+spotbugs-annotations = { module = "com.github.spotbugs:spotbugs-annotations", version.ref = "spotBugAnnotationVersion" }

settings.gradle

@@ -9,34 +9,8 @@ include 'HIRS_Utils',
 
 dependencyResolutionManagement {
     versionCatalogs {
-        libs {
+        create("libs") {
-            version('springboot', '3.0.1')
+            from(files("gradle/versions.toml"))
-            version('jackson', '2.14.2')
-            library('commons-codec', 'commons-codec:commons-codec:1.15')
-            library('commons_io',    'commons-io:commons-io:2.11.0')
-            library('commons-lang3', 'org.apache.commons:commons-lang3:3.13.0')
-            library('bouncycastle', 'org.bouncycastle:bcmail-jdk18on:1.77')
-            library('glassfish_json',   'org.glassfish:javax.json:1.1.4')
-            library('glassfish_jaxb_runtime',   'org.glassfish.jaxb:jaxb-runtime:2.3.1')
-            library('gson', 'com.google.code.gson:gson:2.10.1')
-            library('guava', 'com.google.guava:guava:31.1-jre')
-            library('minimal-json', 'com.eclipsesource.minimal-json:minimal-json:0.9.5')
-            library('protobuf-java', 'com.google.protobuf:protobuf-java:3.24.1')
-            library('jakarta-servlet', 'org.glassfish.web:jakarta.servlet.jsp.jstl:3.0.0')
-            library('jakarta-api', 'jakarta.persistence:jakarta.persistence-api:3.1.0')
-            library('jakarta-xml', 'jakarta.xml.bind:jakarta.xml.bind-api:4.0.0')
-            library('jcommander',    'org.jcommander:jcommander:1.83')
-            library('hibernate-core', 'org.hibernate:hibernate-core:6.1.7.Final')
-            library('jackson-core', 'com.fasterxml.jackson.core', 'jackson-core').versionRef('jackson')
-            library('jackson-databind', 'com.fasterxml.jackson.core', 'jackson-databind').versionRef('jackson')
-            library('pci', 'com.github.marandus:pci-ids:0.3')
-            library('ospackage', 'com.netflix.nebula:gradle-ospackage-plugin:11.2.0')
-            library('springdatajpa', 'org.springframework.boot:spring-boot-starter-web:3.0.1')
-//            library('spring-datajpa', 'org.springframework.boot', 'spring-boot-starter-data-jpa').version('springboot')
-//            library('spring-datajpa', 'org.springframework.boot', 'spring-boot-starter-web').version('springboot')
-//            library('spring-datajpa', 'org.springframework.boot', 'spring-boot-starter-validation').version('springboot')
-            library('lombok', 'org.projectlombok:lombok:1.18.26')
-            library('testng', 'org.testng:testng:7.4.0')
         }
     }
 }

tools/tcg_rim_tool/build.gradle

@@ -24,15 +24,15 @@ dependencies {
     implementation project(':HIRS_Utils')
 
     implementation libs.bouncycastle
-	implementation libs.glassfish.json
+    implementation libs.glassfish.javax.json
     implementation libs.glassfish.jaxb.runtime
     implementation libs.jcommander
-	implementation libs.jakarta.api
+    implementation libs.jakarta.persistence.api
     implementation libs.jakarta.xml
     implementation libs.commons.codec
     implementation libs.hibernate.core
     implementation libs.jackson.databind
-	implementation 'org.apache.logging.log4j:log4j-core:2.19.0'
+    implementation libs.log4j.core
     implementation libs.guava
 
     compileOnly libs.lombok
@@ -56,7 +56,7 @@ configurations.checkstyle {
     }
 }
 checkstyleMain {
-    source ='src/main/java'
+    source = 'src/main/java'
 }
 tasks.withType(Checkstyle) {
     reports {
@@ -90,21 +90,21 @@ ospackage {
     user 'root'
     fileMode = 0755
 
-    into ('/opt/rimtool/lib') {
+    into('/opt/rimtool/lib') {
         from jar.outputs.files
         from configurations.runtimeClasspath
         from 'libs'
     }
 
-    into ('/opt/rimtool/scripts') {
+    into('/opt/rimtool/scripts') {
-      from ('scripts') {
+        from('scripts') {
             exclude {
                 FileTreeElement details ->
                     details.file.name.endsWith('.bat')
             }
         }
     }
-    into ('/opt/rimtool/docs') {
+    into('/opt/rimtool/docs') {
         from('./') {
             include {
                 FileTreeElement details ->
@@ -112,7 +112,7 @@ ospackage {
             }
         }
     }
-    into ('/opt/rimtool/data') {
+    into('/opt/rimtool/data') {
         from('src/test/resources/') {
         }
     }
@@ -132,30 +132,30 @@ buildDeb {
     arch = 'amd64'
 }
 
-task buildZip(type: Zip){
+task buildZip(type: Zip) {
     dependsOn jar
     dependsOn jar
-    from(tasks.jar.archiveFile){
+    from(tasks.jar.archiveFile) {
-        rename( filename ->
+        rename(filename ->
                 "${project.name}.jar")
         into '/'
     }
-    from('./build/resources/test/rim_fields.json'){
+    from('./build/resources/test/rim_fields.json') {
         into '/'
     }
-    from('../../.ci/tcg-rim-tool/configs/Base_Rim_Config.json'){
+    from('../../.ci/tcg-rim-tool/configs/Base_Rim_Config.json') {
         into '/'
     }
-    from('../../.ci/tcg-rim-tool/eventlogs/TpmLog.bin'){
+    from('../../.ci/tcg-rim-tool/eventlogs/TpmLog.bin') {
         into '/'
     }
-    from('../../.ci/tcg-rim-tool/keys/PC_OEM1_rim_signer_rsa_3k_sha384.key'){
+    from('../../.ci/tcg-rim-tool/keys/PC_OEM1_rim_signer_rsa_3k_sha384.key') {
         into '/'
     }
-    from('../../.ci/tcg-rim-tool/certs/PC_OEM1_rim_signer_rsa_3k_sha384.pem'){
+    from('../../.ci/tcg-rim-tool/certs/PC_OEM1_rim_signer_rsa_3k_sha384.pem') {
         into '/'
     }
-    from('../../.ci/tcg-rim-tool/certs/PC_OEM1_Cert_Chain.pem'){
+    from('../../.ci/tcg-rim-tool/certs/PC_OEM1_Cert_Chain.pem') {
         into '/'
     }